similar to: Trouble with R CMD check: I can't seem to get dependencies right (maybe I'm using R_LIBS incorrectly?)

Hello, I've recently transitioned to using R in Linux. My OS/installation versions are: $ Red Hat Enterprise Linux AS release 4 (Nahant Update 6) $ Linux lx-chgmqsd05 2.6.9-67.0.1.ELsmp #1 SMP Fri Nov 30 11:57:43 EST 2007 x86_64 x86_64 x86_64 GNU/Linux I am trying to create a repository of packages under ~/R/library which I've created since I do not have admin access on my system. From my

Hello, I've recently transitioned to using R in Linux. My OS/installation versions are: $ Red Hat Enterprise Linux AS release 4 (Nahant Update 6) $ Linux lx-chgmqsd05 2.6.9-67.0.1.ELsmp #1 SMP Fri Nov 30 11:57:43 EST 2007 x86_64 x86_64 x86_64 GNU/Linux I am trying to create a repository of packages under ~/R/library which I've created since I do not have admin access on my system. From my

Doing help("R_LIBS") brings up a help file (the same one as help(library)), but the help file doesn't mention R_LIBS. It does have a link to .libPaths, which does document R_LIBS. The quickest fix would be for help("R_LIBS") to bring up the .libPaths help file. --please do not edit the information below-- Version: platform = i386-pc-mingw32 arch = i386 os = mingw32

Hello, I'm adding a private library tree in my home directory by adding this to my ~/.Renviron: R_LIBS="~/R/library:${R_LIBS}" so that once in R: R> cat(Sys.getenv("R_LIBS"), "\n") ~/R/library:/usr/local/lib/R/site-library:/usr/lib/R/site-library:/usr/lib/R/library Is this the best way to proceed? Cheers, -- Sebastian P. Luque

Hi, R people. I'm shy reporting this, as a bug in this area sounds very unlikely. Did I make my tests wrongly? I'm still flaky at all this. Let me dare nevertheless, who knows, just in case... Please don't kill me! :-) Not so long ago, I wrote to this list: > (For now, [the library code] works only for me when I do _not_ use `-l > MY/OWN/LIBDIR' at `R CMD INSTALL'

Hi all, Am I using the correct syntax to set a custom R_LIBS when running R CMD INSTALL from the command line? I get: R_LIBS=/Users/hadley/R-dev R CMD INSTALL aL3xa-rapport-08e68ca/ # Desktop : R_LIBS=/Users/hadley/R-dev R CMD INSTALL aL3xa-rapport-08e68ca/ # * installing to library ?/Users/hadley/R? # ERROR: dependency ?ascii? is not available for package ?rapport? But: ls

Dear List, Further to my earlier email, I note that, for me at least, R CMD check is *not* reading R_LIBS from ~/.R/check.Renviron on R 2.15.2 patched (r61228) and R Under Development (r61660). The only way I can get R CMD check to look for packages in a user-supplied library is by explicitly exporting R_LIBS set to the relevant directory. R CMD build *does* read R_LIBS from ~/.R/build.Renviron

Hi! Where to set R_LIBS? I have .Renviron with the line. R_LIBS=/package/R/R-1.5.0/linux/lib/R/library/;/home/wolski/Rpack/ in my home directory but cant access any library stored in the /home/wolski/Rpack/? Eryk -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.- r-help mailing list -- Read http://www.ci.tuwien.ac.at/~hornik/R/R-FAQ.html Send "info",

Hi, I keep getting the error message and a pop-up window for selecting CRAN mirror server from Rgui.exe after setting the R_Libs Warning in install.packages(necessary[!installed], dep = T) : argument 'lib' is missing: using 'D:/Program Files/R/R-2.8.0.libs' --- Please select a CRAN mirror for use in this session --- Error in contrib.url(repos, type) : I set the command

Thanks to Peter Dalgaard , I have made some decent progress as far as getting R to work in linux . I just want to set my environment variable R_LIBS to /u/etlfs/dev/users/leedsmar/R/library ( in linux ) so that I can install specific packages. Does anyone know the syntax and in which file I set this variable ( .Rprofile etc ). I've looked in the installation manual ( i'm mainly on pg 14

Hi, I have Debian Testing running on a Lenovo Thinkpad X1 Carbon (2015, 3rd gen.). I would like to have a package library independent of the installed R version. Under Ubuntu, I used to have the following line in ~/.Renviron: R_LIBS=/usr/local/R/library:/usr/lib/R/site-library This worked fine and /usr/local/R/library showed up in .libPaths(). However, under Debian (with the same ~/.Renviron),

Full_Name: David Firth Version: 2.0.0 OS: Mac OS 10.3.5 Submission from: (NULL) (81.178.234.156) When running R in R Cocoa GUI 1.0 (v2004-10-14), I have > Sys.getenv()[["R_LIBS"]] [1] "/Users/david/Library/R" > .libPaths() [1] "/Users/david/Library/R/library" [2] "/Library/Frameworks/R.framework/Resources/library" The pasting of

Hi, I am interested in customizing the installation of R. I have gone through the ?R Installation and Administration? manual. But some of the stuff is not clear to me and I would like to get clarifications on the following points (for a Windows installation with R_HOME=C:\\R\\R-2.9.1 ) : 1. I understand that I need to create a file, .Renviron with the following path : R_HOME\\etc\\.Renviron where

Dear Johannes, Dear Dirk, Thanks a lot for helping. Here is the missing information. Here is how I installed R. This is basically how Martin Maechler showed me to install R under Ubuntu (in several versions so that they are also recognized by ESS). My goal is to adjust this to make it work for Debian: 1) sudo emacs /etc/apt/sources.list # then add: deb

Error: could not find function "hier.part" things I have tried: 1. reinstall R (lastest version, on windows XP) 2. install package "gtools" 3. include: library(gtools) require(gtools) 4. how I call this function: hier.part(c$Y, xdata, fam = "gaussian", gof = "Rsqu") 5.when I try to check what's in the package "gtools", I get (hier.part is

I would like to have a function that inputs a file name, then reads that data file and does various stuff to it. Something like: doit<-function(filename) { x<-scan("~/rstuff/data/"filename) #for example, if filename is a0.dat, it will scan("~/rstuff/data/a0.dat") ... } Can someone please tell me how to do this? Thanks for any help! Bill Simpson

As from R 2.5.0 users can install packages in their home directories, in directory specified by the environment variable R_LIBS_USER. It's a great feature. But I have a problem with this feature, when R_LIBS is defined. It works well the first time, when R creates the directory defined in R_LIBS_USER. > install.packages('BayesTree') Warning in

Hi I just installed the gmodels package and the installation was successful but when I was trying to load the library I got an error (see below). Interesting, yesterday I wrote to the maintainer of RSQLite apckage because I got the same error. Does somebody knows what is going on ?? thanks, Mayte library(gmodels) Error in dyn.load(x, as.logical(local), as.logical(now)) : unable to load

Hi I just installed the gmodels package and the installation was successful but when I was trying to load the library I got an error (see below). Interesting, yesterday I wrote to the maintainer of RSQLite apckage because I got the same error. Does somebody knows what is going on ?? thanks, Mayte library(gmodels) Error in dyn.load(x, as.logical(local), as.logical(now)) : unable to load

Hi! I want to use one method "combinations" from "gtools" package but in my code I must use also "dprep" method where is method "combinations" too. Mayby I show you result my help function: Help on topic 'combinations' was found in the following packages: Package Library dprep /usr/lib64/R/library gtools