similar to: Is conditional evaluation of R code chunks possible in Sweave ?

Hello I am using Sweave to generate some pdf reports using R on a Windows platform and would like to control the output directory that the generated .tex file goes to. Basically I use the following commands in a batch file: set outdir=c:/output/1234 Rscript -e Sweave('C:/pathpathpath/script.Rnw') Which produces script.tex Sweave has the option of specifying an output directory for

Hi all: I have a question about multi-comparison. The data is in the attachment. My purpose: Compare the predicted means of the 3 methods(a,b,c) pairwisely. I have 3 ideas: #idea1 result_aov<-aov(y~ method + x1 + x2) TukeyHSD(result_aov) diff lwr upr p adj b-a 0.845 0.5861098 1.1038902 0.0000001 c-a 0.790 0.5311098 1.0488902 0.0000002 c-b -0.055 -0.3138902

Hello R-Help I have a question about the "behind the scenes" behaviour of the Rscript -e command and particularly its interaction with Sweave and tempdir(). We are trying to deploy R as a web service to do water quality analyses and have been writing software to call Sweave via Rscript eg: cmd> Rscript -e Sweave('sweavefile.Rnw') One problem we have been having is that

Hello R-help I am having trouble getting gls to find the R objects that comprise a linear model when the data=named.object option(option!) is not specified. In the gls() help it states data is "an optional data frame containing the variables named in model, correlation, weights, and subset. By default the variables are taken from the environment from which gls is called". An example:

Dear R mailing list I would like some help on how to get R to display the same number of significant digits (?) for *all* tick marks on axis labels (yet be flexible enough to handle different data sets that vary by 10-1000X). Consider this simple example: #---------------------------# x <- seq(0,2,by=0.5) xlim <- range(pretty(x,n=5)) ylim <- xlim

Hello R mailing list We are trying to use R and Sweave, running as a web service on a server to prepare statistical reports but are having problems with our anti-virus software apparently prohibiting execution due to what we think is Sweave trying to run an executable in one of the system's temporary folders. As background, we use the following Rscript command to invoke Sweave (the text in

Hello R help list I have been using the smoothScatter function within the "geneplotter" package to make some graphs using a Sweave Rnw script called via Rscript in a DOS/Windows batch file. The Rscript will ultimately be called by a web service with time-out constraints, hence things need to run as swiftly as possible. The geneplotter package is currently loaded each time R is invoked

Hello R help I have been trying to use Rob Hyndman's monotonically increasing spline function. But like another user or two seem have a problem with a missing DLL (namely "spline_coef"). None of the previous help postings seemed to have any solutions to this problem. As per a Ripley suggestion I have deleted all previous versions of R and reinstalled R 2.7.0 and the problem

Hi I need to compare the performance of two sludge inertization methods. For that i want make a manova Wilks test. Description of the experiment: After the calcination at different temperatures my calcinated sludge are submeted to the lixiviation test. In my tables i show the concentration of the some elements in the extract phase. The results: Method A (calcination at 1100 C) Chromium

Dear Colleagues: In an attempt to have things like # See page \pageref{this} inside comments in R code chunks I have modified Sweave.sty as below. I have followed fancyvrb's manual with regard to the use of the commandchars argument. But when compiling with LaTeX (using attached test file) I get a LaTeX error (/usr/share/texmf-texlive/tex/latex/ae/t1aett.fd) ! Missing \endcsname

Hello Folks, When I run the document below through sweave, rgui.exe/rsession.exe leaves a file handle open to the sweave-001.pdf graphic (as verified by process explorer). Pdflatex.exe then crashes (with a Permission Denied error) because the graphic file is locked. This only seems to happen when there is an error in the sweave document. When there are no errors, no file handles are left open.

Max & Friends, I've run into a problem with odfWeave 0.7.5 running under R 2.7.1 (Windows XP, SP2) doing some monthly production reports. Under 2.7.1 I'm getting various parsing errors after Sweaving starts, e.g.: Sweaving content.Rnw Writing to file content_1.xml Processing code chunks ... Error in parse(text = cmd) : unexpected input in "" > Above case works

Dear Colleagues: I have used \SweaveOpts{prefix.string=plot, eps = FALSE, pdf = TRUE} \SweaveOpts{width=5, height=4} <<fig=T>>= plot(...) @ But the figure still has a width of 80% of the text width, the default set up by Sweave, which issues a LateX command in Sweave.sty of \setkeys{Gin}{.8\textwidth}. Sweave.sty has a command \ifthenelse{\boolean{Sweave at

Hello, recently I read about the SweaveListingUtils package and now I want to try it out. However, I can not make it work... Below a minimal example. The problem seems to be the following line (generated by SweaveListingPreparations()?): \ifthenelse{\boolean{Sweave@gin}}{\setkeys{Gin}{width=0.6\textwidth}}{}% If I comment out this line, it works. What can I do about this? I am using the

Hello list I am trying to use a Googlemaps tile (png file, 640 X 640 px tile) as a background to a plot and have been using the rgdal library to read in the PNG file (modified from code in the RGoogleMaps package). This works OK. My problem is is that the SGDF2PCT function in rgdal seems to be limited to 256 colors and this is introducing (I think) some degradation to the image which appears on

Hello R-help I am having a curious problem. I am using a batch file to call an R script and am getting an error when performing a lm() fit using factorial data only when running in batch mode (see below). I do not get the error when executing the same code in GUI mode in R 2.10.1. Nor do I get the error when using Rscript version 2.9.2.... ####################################### #windows

Hi, I work on MacOS, trying to Sweave an UFT8 document. AFAI remember R 2.14 used to render a warning when the encoding was not declared when using Sweave. With R 2.15 it seems to render an error. Sweave("sim_pi.Rnw") Error: 'sim_pi.Rnw' is not ASCII and does not declare an encoding Declaring an encoding by adding a line like \usepackage[utf8]{inputenc} in the preamble does

Dear List I'm working to modify the font size inside of an plot generated using Sweave. I found a thread in the archives addressing this issue from F. Leisch which suggests the solution below. I'm wondering if this is still the best option for this problem or if another solution may exist. Here is how I have resolved the issue based on the prior thread. 1) I modified the original

Hi everybody, I don't get odfWeave to run properly. My odt file is as a simple as: ------------------------ Some text. <<echo=FALSE>>= print(1:10) @ ----------------------- The output I get ist the following: ----------------------------------- > odfWeave("roffice.odt", "rofficeOUT.odt") Copying roffice.odt Setting wd to

Hello I would like to use SNOW to parallelise some computations to be made on columns of a data frame, using different parameter values for each SNOW "worker". I gather(?) clusterMap() is the appropriate SNOW function to do something like this. I suspect the problem lies in the fact that I am only supplying one data frame argument for the flow.dat function argument yet the a, b, and x