similar to: Question about the SSOAP package

Hi I'm trying to use a bioconductor package (KEGGSOAP) which relies on Rcurl and SSOAP. As an example, a function exists: > list.organisms function () { orgs <- matrix(unlist(.SOAP(KEGGserver, "list_organisms", "", action = KEGGaction, xmlns = KEGGxmlns), use.names = FALSE), ncol = 2, byrow = TRUE) temp <- orgs[, 2] names(temp)

Dear list, I've been using R for a while, but am new to web services. I'm a relatively novice programmer; advance apologies for incorrect terminology. I'm trying to send queries and get results back from a SOAP server, using the SSOAP package. My code contains sensitive API keys and URLs, and unfortunately I'm unable to share it uncensored. I have not been able to reproduce the

I am currently trying to access a SOAP web service (hosted on a JBoss5 server and defined as a J2EE-ws service) via the SSOAP R-package. But all I can get is a NULL answer. The web service seems to work as it can be accessed using a general web-service tester. The web service wsdl is here: http://smg8.ulb.ac.be:8080/web2?wsdl. This is how I try to call the web service from R: --- >

Dear community, has anyone managed to get SSOAP working with the ChemSpider Web APIs, using functions which need the security token? I use SSOAP 0.9-0 from the OmegaHat repository. In the example code from SSOAP there is a sample which uses a token function. Interestingly, it checks if(!is.character(token)) first (and proceeds if the token is NOT character.) I can't test that function since I

First of all, let me confess that I am a newbie to R and don't know much about the language or the environment. We have a need for plugging in R in our production runtime and need the ability to pull data out of our existing services. I am trying to see if I can take advantage of SSOAP such that we can expose the data via webservices and use SSOAP to call into them. Our runtime is mostly

Dear list, I am trying to use the SSOAP package to access a very simple SOAP service, included as a demonstrator in the axis2 Apache package: "Version" (takes no input parameters and should return a string with the version number). The web service itself seems to be working as I could access it using an other client (eclipse Web Server tester). You will find the service wsdl here:

Hi, I have a SOAP service, provided by BioMoby which I'd like to call via SSOAP. My service breaks during genSOAPClientInterface() genSOAPClientInterface(def=service, verbose = TRUE) Operation MassBank_Simple_2 Error: Cannot resolve SOAP type in empty context Problem seems to be that there are no <types> defined in the WSDL, and that the service passes input/output as a single

Hello, we are writing rich internet user interfaces and like to call R for some of the computational needs on the data, as well as some creation of image files. Our objects communicate via the SOAP interface. We have been researching the various packages to expose R as a SOAP service. No current CRAN SOAP packages however. Found 3 to date: RSOAP (http://sourceforge.net/projects/rsoap/)

Dear all, I've been trying on and off for the past few months to get SSOAP to work with chemspider. First I tried the WSDL file: cs<-processWSDL("http://www.chemspider.com/MassSpecAPI.asmx?WSDL") Error in parse(text = paste(txt, collapse = "\n")) : <text>:1:29: unexpected input 1: function(x, ..., obj = new( ? ^ In addition:

Dear R folks: I am trying to use SSOAP (version 0.2-2) package in R (version 2.1.0,linux) to access SOAP service on NCBI (http://www.ncbi.nlm.nih.gov) its WSDL file is at http://www.ncbi.nlm.nih.gov/entrez/eutils/soap/eutils.wsdl but some errors occured: > ncbi <- processWSDL("http://www.ncbi.nlm.nih.gov/entrez/eutils/soap/eutils.wsdl") > ff <-

Hi, I am trying to create a BioMoby client in R using SSOAP. BioMoby is a normal SOAP web service, with request and response messages wrapped in BioMoby XML dialect. Since the particular WSDL I am having problems with is autogenerated and used similarly by *many* services, it would be quite important to a) fix SSOAP or b) fix the WSDL generator. I am a bit lost how to continue debugging

Hello, I am a complete newbie to Web Services. I have set up an account to the MSN Developer Services and have acquired a key for Live Search via SOAP. I want to send and receive requests through R. I have already found out that the two packages I need is RCurl and SSOAP. I have installed them but now, as it's evident after long hours of trying, I have absolutely no idea how to use them. Is

Hi, so, last post from here unless I can provide any more input to fix the upstream package. On Tue, 2010-06-22 at 10:02 +0200, Steffen Neumann wrote: > So I got a bit further, the reason for the error is > that the WSDL *does not have* any <wsdl:types>...</wsdl:types>, I created a local copy and inserted a dummy <wsdl:types>...</wsdl:types> element. Then, my

Hi, I'm having a bit of trouble using SSOAP to send requests containing complex types. It seems as though processWSDL does not generate functions for converting the generated types into SOAP requests, but it does generate them for converting **from** SOAP requests to the complex types. The error that I get when trying to pass an object of type "LoginReq" (as generated by

I recently started trying R and SSOAP and was able to successfully try a "hello world" service. I am now trying to get a more complicated interface to work with SSOAP and so far failed miserably at that and so need any help I can get from here. The service I am attaching is a prototype for a full service that would take information to identify a data source and a query to run and return

Hi , I'm trying to call a php webservice. I tried examples given in pdf - R as Web Client and SSOAP manual. I'm using RCurl and SSOAP library. I'm facing problem with SSOAP - Error in getProtocol(server) : call to standardGeneric("server") and with RCurl i only see the web service page. I want to call a PHP web service and send paramters to web service and retrieve

Hello everybody, I'm using SSOAP and RCurl to call webservice. I got success in calling webservice with string as an input. Now i want to pass array as an input(can be single or multidimensional). When i do that i get error. unable to find an inherited method for function "toSOAP", for signature "data.frame", "textConnection", "NULL" When i remove

Hello all, Is it possible to create web service in R? Any links or book i can refer! My second question is i'm trying to call a web service using RCurl package. The pdf from google doesnt have entire code in it.[ R as web client - RCurl package]. It's not written how to send parameter for a function or i'm missing something. I want to pass parameter to a function of a

Hello, I am having trouble getting the curlPerform function to authenticate using the .netrc file. From the documentation I've read it certainly seems as though this function should be able to authenticate via the .netrc file. The example I am using here comes from the "R as a Web Client- the RCurl package" paper and demonstrates using the .netrc file to access the

Dear list members, I encountered this problem and the solution pointed out in a previous thread did not work for me. (e.g. install.packages("RCurl", repos = "http://www.omegahat.org/R") I work with Ubuntu Hardy, and installed R 2.6.2 via apt-get. I really need RCurl in order to use biomaRt ... any help would be greatly appreciated. Best wishes, Emmanuel