similar to: mpirun question with Rmpi

Dear R People: I'm having some trouble with mpiexec and Rmpi. I would like to be able to pass in the number of "children" via the mpiexec command (from the command line). this is in SUSE10.1, with R-2.7.1 Here are my files: cat eb.R library(Rmpi) mpi.remote.exec(paste("i am",mpi.comm.rank(),"of",mpi.comm.size())) mpi.quit() hodgesse at

Dear R Debian Users: I wrote a quick C program (eventually to become R code) and compiled it as: mpicc -o greet greet.c So far so good. Now when I run mpirun, this happens: erin at erin-laptop:~$ mpirun -np 2 greet ----------------------------------------------------------------------------- It seems that there is no lamd running on the host erin-laptop. This indicates that the LAM/MPI

Dear R People: I am having some trouble with the snow package. It requires MPICH2 and Rmpi. Rmpi is fine. However, I downloaded the MPICH2 package, and installed. There is no mpicc, mpirun, etc. Does anyone have any suggestions, please? Thanks in advance! Sincerely, Erin Hodgess Associate Professor Department of Computer and Mathematical Sciences University of Houston - Downtown mailto:

Hi, I am working on a 64-bit rocks cluster and am relatively new to the R package. I am trying to get Snow working with R and Rmpi and have run into the following issue. R is able to load the Rmpi and snow libraries and is able to run simple commands both interactively and batch as follows: -------------------------------------------------------------------------------------------------------

Hi all, now I'm testing R in a "virtual cluster", made it with VirtualBox. This one has 3 nodes, running CentOS 5 and OpenMPI 1.2.8, and the principal node (called "server") exports the /home to other nodes. I have installed R and OpenMPI in /home, in fact, it seems work OK. Editing the openmpi-default-hostfile and run "mpirun -np 3 hostname" I can see the

Hello: Anybody knows how to run Rmpi through PBS (Portable Batch System) on a cluster computer. I'm using a supercomputer which require to submit jobs to PBS queue for dispatching. I tried use mpirun in my PBS script. But all my Rslaves are spawned to the same node. This is not desired. Any suggestions are welcome! Thanks in advance. ======================================== Shengqiao Li

Dear knowledgeable experts :-), I am trying to get openmpi, Rmpi and SNOW running on a Myrinet/GM cluster. I'm not an IT expert, but I surely could use a working installation of Rmpi and SNOW. I try to load the Rmpi library and get the following: > library(Rmpi) [master:07230] mca: base: component_find: unable to open osc pt2pt: file not found (ignored)

Dear R People: I'm having trouble installing Rmpi on a debian machine. Here is my output: bccd at node000:~$ /bccd/home/bccd bccd at node000:~$ bccd at node000:~$ export RMPI_TYPE=OPENMPI bccd at node000:~$ R CMD INSTALL Rmpi_0.5-9.tar.gz * installing to library '/bccd/home/bccd/R/x86_64-pc-linux-gnu-library/2.15' * installing *source* package 'Rmpi' ... checking for gcc...

Hello, We have R working with Rmpi/openmpi, but I'm a little worried. Specifically, (a) the -np flag doesn't seem to override the hostfile (it works fine with fortran hello world) and (b) I appear to have twice as many processes running as I think I should. Rmpi version 0.5.5 Openmpi version 1.1 Viglen HPC with (effectively) 9 blades and 8 nodes on each blade. myhosts file contains

Dear R People: I have a data frame, xm1, which has 12 rows and 4 columns. If I put is xm1[,-4], I get all rows, and columns 1 - 3, which is as it should be. Now, is there a way to use the names of the columns to omit them, please? Thanks so much in advance! Sincerely, Erin -- Erin Hodgess Associate Professor Department of Computer and Mathematical Sciences University of Houston - Downtown

Hi again. I'm putting together a little project with R, python, and a website. So I have an HTML file, a py file, an R file. Here is the HTML file: <form action="/cgi-bin/radio4.py" method="post" target="_blank"> <input type="radio" name="subject" value="Integrate" /> Integrate <input type="radio"

Hi team, I am beginning on R and I try to install Rmpi library and I have problems, I have installed LAM-MPI on Rocks; [rcnavarro at hpc-cip ~]$ laminfo LAM/MPI: 7.1.1 Prefix: /opt/lam/gnu Architecture: x86_64-unknown-linux-gnu Configured by: root Configured on: Wed Oct 19 18:12:25 EDT 2005 Configure host: rocks-156.sdsc.edu Memory

Everything is ok on Firefox, IE, and iPad. Thanks, Erin On Tue, Jan 8, 2013 at 7:58 PM, Erin Hodgess <erinm.hodgess at gmail.com> wrote: > Dear R People: > > Has anyone used R2HTML in web files that were on the Blackboard LMS, please? > > I'm starting to do these but wanted to know if there were any > potential pitfalls. > > Thanks, > Erin > > > --

Dear R People: Here is a goofy question: I want to extract the zip code from an address and here is my work so far: > add1 results.formatted_address "200 W Rosamond St, Houston, TX 77076, USA" > add1[1][32:36] <NA> <NA> <NA> <NA> <NA> NA NA NA NA NA > str(add1) Named chr "200 W Rosamond St, Houston, TX 77076,

I believe that repo just follows the directions on my blog. Without seeing Dr. Hodges?s code, my initial concern is the many references to Cygwin. My method specifically does not use Cygwin but MSYS2 and Mingw64/Rtools35. That will likely change to solely Rtools40 once R3.6 is released due to the Msys system being built in to it. There may be some library conflicts between Cygwin and

Hello together! I've Debian 6.0.3 with OpenSSH_5.5p1 and problem with the execution of remote commands via ssh. It seems as if the first command isn't looked up in all "$PATH" dirs. Here normally I should get the version information of mpirun twice but the first one fails: $ ssh cluster2 mpirun --version ; mpirun --version bash: mpirun: command not found mpirun (Open MPI) 1.4.3

Thank you! On Thu, Aug 17, 2017 at 4:55 PM, Bert Gunter <bgunter.4567 at gmail.com> wrote: > r-package-devel is probably a better place to post this, especially if > you do not get a satisfactory reply here. This list is about R > programming, as you presumably know; your query is not. > > Cheers, > Bert > > > Bert Gunter > > "The trouble with having

Dear R People: I have generated the following table: > table(zza$DEATH,zza$GENDER) F M 2009-04-21 0 1 2009-04-22 4 2 2009-04-24 6 0 2009-04-25 1 3 2009-04-26 2 0 2009-04-28 3 0 2009-04-29 2 2 However, instead of total counts in the F and M columns, I would like percents. How would I do this, please? thanks, Erin -- Erin

Dear R People: Here is something that I am sure is very simple. I'm just trying to re-create the C convolution example in the Extensions manual. Here is the subroutine: void convolve(double *a, int *na, double *b, int *nb, double *ab) { R_len_t i, j, nab = *na + *nb - 1; for(i = 0; i < nab; i++) ab[i] = 0.0; for(i = 0; i < *na; i++) for(j = 0; j < *nb; j++) ab[i + j] += a[i] *

Dear R People: When I want to produce a small sample confidence interval using t.test, I get the following: > t.test(buzz$var1, conf.level=.98)$conf.int [1] 2.239337 4.260663 attr(,"conf.level") [1] 0.98 How do I keep the attr statement from printing, please? I'm sure it's something really simple. Thanks, Sincerely, Erin -- Erin Hodgess Associate Professor Department