similar to: Subsetting an array by a vector of dimensions

Dear all, is there a good way to create SVG plots with R whose elements have titles (tooltips) or act as hyperlinks? I am using the RSvgDevice package, which works great - but it doesn't seem to support the notion that plot objects have titles or are act as hyperlinks, so I am helping myself by giving the objects funny unique colors and then postprocessing the .svg file. I wonder

Hi, when running the following on a fresh R, library("IRanges") annotation showMethods("annotation") Biobase:::annotation showMethods("annotation") I get (see the "^^^^^" marked output at the bottom): > library("IRanges") Carico il pacchetto richiesto: 'IRanges' The following object(s) are masked from package:base :

Full_Name: Peter Ehlers Version: rw2001pat (2005-02-03) OS: Win XP Submission from: (NULL) (136.159.61.115) formatC(1, flag="s") crashes Rgui. Similarly for flag=[SnZ]. Stupid input, of course, but I'm error-prone. Peter

Hello! I am undertaking my first attempt at using compiled C code within R and have run into this lovely problem when I call my C code (using .C). The instruction at "0x10001d1b" referenced memory at "0x01fa2000". The memory could not be "written". Now this doesn't happen every time and furthermore I've tested the code in plain C and it all works

Any better solution than this ? sum(strsplit("TCGGGGGACAATCGGTAACCCGTCT", "")[[1]] == "G") _________________________________________________________________ [[alternative HTML version deleted]]

Hi, I am finding the recently added [1] functionality of embedding raster images into plots on R devices very useful! Thanks to Paul Murrell and others for providing that. I noted that in https://svn.r-project.org/R/trunk/src/library/grDevices/src/devPS.c a macro is defined: #define MAX_RASTERS 64, and consequently, I get Error in grid.Call.graphics("L_raster", x$raster, x$x, x$y,

huber at ebi.ac.uk wrote: > Full_Name: Wolfgang Huber > Version: R version 2.4.0 Under development (unstable) (2006-07-09 r38523) > OS: i686-pc-linux-gnu > Submission from: (NULL) (62.253.128.15) > > > There appears to be unintentional behaviour in the size of the bounding box for > PDF graphics produced with the current R2.4, compared to 2.3.1. I posted two PDF >

Greetings, I have "inherited" a cDNA macroarray dataset that is structured as follows. Three different stressors were tested. For each stressor, there are two treatments (control and stressed). For each treatment, two biological replicates exist, and these are paired (i.e., there is a stressed array for colony A and a control array from this same colony). For one of these samples,

Dear all, I have a code chunk in my Rnw file that, when executed, outputs carriage return characters ('\r') to inform on the progress (e.g. "sweep 4 of 1024\r"). But Sweave interprets this as a newline character, and therefore I get countless pages of output in my vignette where I only really want one line. Any ideas? Thanks E

Hi, I run into following error when using heatmap() for data matrix "xx". Any help is appreciated? "xx" contains many "NA"s. > hv <- heatmap(data.matrix(xx)) Error in hclustfun(distfun(if (symm) x else t(x))) : NA/NaN/Inf in foreign function call (arg 11) Thanks a lot. Yuhong

Hi, I have a set of matrices (MAT.1, MAT.2, ...) and I'd like to perform the same operation on each of them (for simplicity, say . I'm writing a function for this so that it can be repeated for different sets with different numbers of matrices. The matrices have the same number of columns, but do not have the same number of rows. My thought is to loop thru the set. but I'm not sure

R 2.5.1 on WinXP I'm trying to create new variables in a dataframe called jaw, as powers of jaw$age up to the sixth power, and name them jaw$age.(--the digit corresponding to the power--) Obviously none of these work (silly for me to try, I suppose): for (i in 2:6) { jaw$age.'i' <- jaw$age^i } for (i in 2:6) { jaw$age.i <- jaw$age^i } for (i in 2:6) {

Deal all, new as I am to developing packages for R-Project, I apologize on beforehand for questions that are too obvious. I am trying to 'add' a PDF document containing some detailed information to a package. The way I understand the Rexts.pdf document, I should add my .PDF document to the /inst/doc/ folder, and links to the files should be build automatically. However, after

Good day, The use of "rounding" also doesn't make sense. If The number is halfway between two integers, it is rounded to the nearest even integer. > round(2.5) [1] 2 -------------------------------------- Dario Strbenac University of Sydney Camperdown NSW 2050 Australia

Hi, I was checking the source code to the function combn that "generates all combinations of the elements of 'x' taken 'm' at a time.", because I wished to modify it. I have a doubt about a statement. This is the main loop. ._1 <- 1:1 nmmp1 <- n - m + ._1 while (a[1] != nmmp1) { if (e < n - h) { h <- ._1 e <-

I'm working with a genomic data-set with ~31k end-points and have performed an F-test across 5 groups for each end-point. The QA measurments on the individual micro-arrays all look good. One of the first things I do in my work-flow is take a look at the p-valued distribution. it is my understanding that, if the findings are due to chance alone, the p-value distribution should be uniform. In

Dear all, Since my package is based on S4 classes, I would like to know how to add a slot to an existing S4 class without breaking the code of users of my package. Assume the following S4 class: setClass("MyClass", representation(name = "character", type = "character", data = "data.frame" ), prototype(name =

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Hi all I recently started to write a matrix exponentiation operator for R (by adding a new operator definition to names.c, and adding the following code to arrays.c). It is not finished yet, but I would like to solicit some comments, as there are a few areas of R's internals that I am still feeling my way around. Firstly: 1) Would there be interest in adding a new operator %^% that performs

I try to sort this dataframe: [,1] [,2] [,3] [,4] [,5] [,6] [,7] [,8] [1,] "CM" "BARBY" "INCREASED" " 0" " 2" " 0" " 1" " 1" [2,] "CM" "BARBY" "REDUCED" " 0" " 1" " 2" " 2" " 5" [3,] "CM"