similar to: Sweave figure

Dear Colleagues: I have used \SweaveOpts{prefix.string=plot, eps = FALSE, pdf = TRUE} \SweaveOpts{width=5, height=4} <<fig=T>>= plot(...) @ But the figure still has a width of 80% of the text width, the default set up by Sweave, which issues a LateX command in Sweave.sty of \setkeys{Gin}{.8\textwidth}. Sweave.sty has a command \ifthenelse{\boolean{Sweave at

In an Sweave slide, I want to use sem::read.moments() and sem::specify.model(), which work by using scan() to read the following lines, up to the first blank line. However, Sweave throws an error: > Sweave("sem-thurstone.Rnw") Writing to file sem-thurstone.tex Processing code chunks ... 1 : term hide (label=arrests-setup) 2 : echo term hide (label=thurstone-data) Error:

Does anybody have a workable system to run an Rnw document through R-Sweave when necessary, but to just run it through LaTeX if no new R calculations are needed? I.e., the figures already exist, I do not need R to do more work for me, so I send the document straight to LaTeX. I want to leave open the option that I might need to run the document through Sweave in the future, so I don't want

Hi, I'm trying to realise a repport with R and Latex (TeXnicCenter and Miktex for Windows) using Sweave(). I'd like to save my plots in a given size. How can I do that ? The code is : \SweaveOpts{prefix.string = figs/plot, eps = FALSE, pdf = TRUE} <<partI, echo=FALSE ,fig=TRUE, include=FALSE>>= plotFunction() @ \includepdf[pages=-]{figs/plot-partI} When I use

Hi, I seem to be facing a strange problem when I use Sweave for creating a LaTeX document of the R lme() output --- The EPS and PDF figure files get created, but are empty. I have attached a reproducible example below (taken from the R lme() help example). ------------------------------------------------------------------------------------ \documentclass[a4paper,10pt]{article}

I have found a quite strange (to me) behaviour in Sweave. It only occurs in the following situation: 1. define a variable in one chunk 2. use it within a subsequent figure-generating chunk 3. delete it at the end of that same chunk Then the Sweave driver chokes, not finding the variable name when generating the figure Example: % document bug2.Rnw \documentclass{article} \usepackage{Sweave}

Hello I think there is a conflict between setwd() and \SweaveOpts{prefix.string=}. In the same document, those both command get Sweave confuse the files and directories. See: say my .Rnw document is in File1 If one inserts some setwd() for another file: -setwd(File2) then the command \SweaveOpts{prefix.string=graphics/Rplots} will search the "graphics" folder in File2 because of

Trying to Stangle / Sweave a file $ cat vignette.Rnw %\VignetteEngine{knitr} \documentclass{article} \begin{document} \end{document} results in a misleading error message: ~/tmp$ R CMD Stangle vignette.Rnw Error: Vignette engine package not specified Execution halted when what is missing is the full specification knitr::knitr; 'vignette engine package and function not specified' ?

When using Sweave in connection with the driver RweaveLatex(), global options can be set with \SweaveOpts{}, e.g. \SweaveOpts{keep.source=T}. Does anybody know if it is possible to set global options in the same way when using Sweave with the driver RweaveHTML(). Regards Søren [[alternative HTML version deleted]]

Hello Folks, When I run the document below through sweave, rgui.exe/rsession.exe leaves a file handle open to the sweave-001.pdf graphic (as verified by process explorer). Pdflatex.exe then crashes (with a Permission Denied error) because the graphic file is locked. This only seems to happen when there is an error in the sweave document. When there are no errors, no file handles are left open.

Hi: I am trying to create a dynamic latex table using \Sexpr{} but it's not evaluating it. I also tried the example below without Sweave and also fails. I have also copied the Sweave.sty to my working directory but nothing seems to work. Do I need to have certain package in order to run \Sexpr{}? \documentclass[a4paper]{article} \usepackage{C:/R/R-2.8.1/share/texmf/Sweave} \begin{document}

Hi, I was wondering if it's possible to have fonts in plots to be autoscaled to the same font size used by LaTeX in a surrounding Sweave document. Here's a short example in which the fonts of the first plot are barely readable: --8<------------------------schnipp------------------------->8--- \documentclass{article} \usepackage{graphicx} \newcommand{\mytext}{Some normal sized

Dear all I've just tried the brand new 'grdevice' option in Sweave but couldn't make it work. When I declare \SweaveOpts{grdevice=pdf} or \SweaveOpts{grdevice=cairo_pdf} trying to plot something simple <<fig=T, echo=T>>= plot(1:10,1:10,main='Some title') @ would result in an Sweave error: 18:16:47.299: 1 : term verbatim 18:16:47.308: 2 : echo term verbatim

Hi, I am trying to use ggplot2 graphics with Sweave, but I got problems with transparency support when generating pdf figures, even if I specify a ?pdf.version? argument in Sweave options. More precisely, forcing the pdf version by creating the file manually works : <<fig=FALSE,results=HIDE>>= pdf(version="1.4",file="foo.pdf") ggplot(d,aes(y=t,x=u)) +

Dear all, When I use the cacheSweave package together with the Sweave option keep.source = TRUE, all the LaTeX code before the Sweave code chunk is included in the TeX file to be compiled. For example, with the following Sweave file \documentclass[12pt]{article} \usepackage[nogin]{Sweave} % Sweave options \SweaveOpts{keep.source=TRUE, strip.white=TRUE, eps=FALSE, pdf=TRUE} \begin{document}

does anyone know to rezize a table produzed by xtable? The size of my table is too big and I would like to resize it like using resizebox but it gives an erros when I try using it using it its fine \SweaveOpts{echo=false} <<results=tex>>= xtable(stats0,caption='Número de transacções dos artigos frequentes e infrequentes',label='tab:INEStats') @ but the size is too

Is it any way? This code doesn''t work: %%%%%%%%%%%%%%% \multido{}{10}{ <<fig=T>>= ... @ } %%%%%%%%%%%%%%% Or: %%%%%%%%%%%%%%% <<1, fig=T>>= ... @ <<>>= <<1>> @ %%%%%%%%%%%%%%% Serguei Baranov, MSc. Max-Planck-Institut fur Molekulare Genetik Abteilung Lehrach, room 2.112 Ihnestrasse 73 14195 Berlin-Dahlem Germany Tel. 49-30-8413-1667 Fax.

List, I would like to set a variable to hold, say, the size of my plots in a Sweave document. i.e. something like the following in my '.Rnw' file: ============================================================================== smallPlotSize = 4 <<fig1, echo=false, results=hide, height=smallPlotSize, width=smallPlotSize, fig=true>>= dat <- read.table("

Hi everyone, I'm using R, Latex and Sweave for some years now, but today it confuses me alot: Running Sweave produces only figures in .pdf format, no .eps figures. The header looks like this: <<echo=TRUE, fig=TRUE, label=Fig1>>= There was no error message. Does anybody have an idea? Any changes in the Sweave-package? Or a missing driver or something like that? I recently

Hola Tengo un problema con Sweave y xtable, concretamente quiero cambiar el color según un criterio, creo que es más fácil explicar con los siguientes ejemplos, uno puede correr directamente porque es R, al siguiente código hay que guardarlo como Rnw, y luego puede ser corrido en R, donde seguramente al correr este se darán cuenta de mis dos problemas porque saltan al abrir el pdf que se obtiene