similar to: Problems with lme

Hello, I have the next function call: lme(fixed=Error ~ Temperature * Tumour ,random = ~1|ID, data=error_DB) which returns an lme object. I am interested on carrying out some kind of lsmeans on the data returned, but I cannot find any function to do this in R. I'have seen the effect() function, but it does not work with lme objects. Any idea? Best, Dani -- Daniel Valverde Saub? Grup

Hello, I have this command: x.axis <- seq(from=0.5, to=4.5, length.out=13112) How can I which of the x.axis components is the closest to a given value, for example 3.2? Best, Dani -- Daniel Valverde Saub? Grup de Biologia Molecular de Llevats Facultat de Veterin?ria de la Universitat Aut?noma de Barcelona Edifici V, Campus UAB 08193 Cerdanyola del Vall?s- SPAIN Centro de Investigaci?n

Hello, I am creating a plot and I would like to know how to put this expression to the y axis ?mol/10^6 cells I've tried some combinations using the expression() function, but none of them worked. Any idea? Best, Dani -- Daniel Valverde Saub? Grup de Biologia Molecular de Llevats Facultat de Veterin?ria de la Universitat Aut?noma de

Hello, I have a vector, lets say x <- 1:50 I would like it to be cut at certain points, being for example 1:5, 6:11, 12:17, ... How can I do it? I have tried the cut() function, but I don not know how to place the cutting points properly. Best regards, Dani -- Daniel Valverde Saub? Grup de Biologia Molecular de Llevats Facultat de Veterin?ria de la Universitat Aut?noma de Barcelona

Hello, I have a text file with this structure: # File created = Thursday, August 28, 2008 3:33:02 PM GMT # Data set = 373 2 1 C:\Bruker\TOPSPIN GABRMN # Spectral Region: # LEFT = 4.5 ppm. RIGHT = 0.5 ppm. # # SIZE = 13111 ( = number of points) # # In the following ordering is from the 'left' to the 'right' limits! # Lines beginning with '#' must be considered as

Hello, I would like to convert an Rd object to a latex file, so that I can put it in my thesis. How can I do it? I tryed latex(), but it only works for code... Best, Dani -- Daniel Valverde Saub? Grup de Biologia Molecular de Llevats Facultat de Veterin?ria de la Universitat Aut?noma de Barcelona Edifici V, Campus UAB 08193 Cerdanyola del Vall?s- SPAIN Centro de Investigaci?n Biom?dica en

Forget my last message, it was a really stupid problem. Sorry about the mess. Best, Dani -------- Missatge original -------- Assumpte: Problems when checking a package Data: Tue, 05 Feb 2008 11:20:28 +0100 De: Dani Valverde <daniel.valverde at uab.cat> A: R Help <r-help at r-project.org> Hello, I am tryining to build a package called NMRTools and when I check it using R CMD

Hello, I have two vectors, one with 13112 points and the other one with 10909. I wonder if there is a way to interpolate the data so the shorter vectors has the same number of points as the longer one. Best, Dani -- Daniel Valverde Saub? Grup de Biologia Molecular de Llevats Facultat de Veterin?ria de la Universitat Aut?noma de Barcelona Edifici V, Campus UAB 08193 Cerdanyola del Vall?s-

Hello, I would like to place some text that should appear in the same position of the graphic device, preferably outside the plotting area, regardless the x and y axes limits. How can I do this? Best, Dani -- Daniel Valverde Saub? Grup de Biologia Molecular de Llevats Facultat de Veterin?ria de la Universitat Aut?noma de Barcelona Edifici V, Campus UAB 08193 Cerdanyola del Vall?s- SPAIN

Hello, I would like to combine different label sizes in the same x-axis, for example 1 2 3 4 5 6 7 8 9 How can I do it? Best, Dani -- Daniel Valverde Saub? Grup de Biologia Molecular de Llevats Facultat de Veterin?ria de la Universitat Aut?noma de Barcelona Edifici V, Campus UAB 08193 Cerdanyola del Vall?s- SPAIN Centro de Investigaci?n Biom?dica en Red en Bioingenier?a, Biomateriales y

Hello, I have carried out an lda analysis using the lda function of MASS package. I have plotted the LD1xLD2 to represent the data. Now I would like to get the centroids for each group of data and plot it on the LD1xLD2 graph. How can I get the centroid value from the lda object? Best, Dani -- Daniel Valverde Saub? Grup de Biologia Molecular de Llevats Facultat de Veterin?ria de la

Hello, This is a very basic question, but I don'y know the answer. I have these data delta <- c(28.6-8.825,28.6-8.828,28.6-8.836,28.6-8.845,28.6-8.897,28.6-8.944,28.6-9.027,28.6-9.091,28.6-9.263,28.6-9.4,28.6-9.7,28.6-9.981, 28.6-10.287,28.6-10.48,28.6-10.684,28.6-10.875) ph <- c(4.4,4.6,4.8,5,5.2,5.4,5.6,5.8,6,6.2,6.4,6.6,6.8,7,7.2,7.4)

Hello, I am trying to perform a glm analysis on a 68x13113 matrix (named data.spect). The first column corresponds to the predictor (data.spect[,1]) and the rest to the response variables (data.spect[,2:13113]). When I try this code glmObject <- glm(data.spect[,2:13113]~data.spect[,1]) I get the following error: Error: (subscript) logical subscript too long Could anyone help me on

Hello, I have a sequence of numbers: seq(1:50) and I would like to have all the possible combinations with this numbers without repeating any combination: 11, 12, 13, ... ,22,23,24,... How can I do it? Best, Dani -- Daniel Valverde Saub? Grup de Biologia Molecular de Llevats Facultat de Veterin?ria de la Universitat Aut?noma de Barcelona Edifici V, Campus UAB 08193 Cerdanyola del Vall?s-

Hello, I have a dataframe named myMatrix with the structure Treatment Time Cr mIb ... Being the treatment and time the predictors and Cr, mIb and so on the response variables. When I call Cr.aov <- aov(Cr~Treatment, data=myMatrix) I got this error: Error in storage.mode(y) <- "double" : invalid to change the storage mode of a factor In addition: Warning message: In

Hello, I am trying to insert a certain number of points into a certain position of a vector with this code: x <- seq(1:10909) x1 <- c(13112-10909) spect1 <- rnorm(13112) interpol <- approx(x,spect1,xout=c(seq(from=1, by=((10909 - 1)/(x1 - 1)), length.out=x1))) pos <- round(interpol$x,0) intensities <- interpol$y spect2 <- insert(spect1,ats=pos,values=intensities)

Hello, Is there any function like gsub(), that can match and replace patterns in a matrix or a data frame? Cheers! Dani -- Daniel Valverde Saub? Grup de Biologia Molecular de Llevats Facultat de Veterin?ria de la Universitat Aut?noma de Barcelona Edifici V, Campus UAB 08193 Cerdanyola del Vall?s- SPAIN Tlf. +34 93 581 1910 Fax: +34 93 581 1573

Hello, I have a large data matrix (68x13112), each row corresponding to one observation (patients) and each column corresponding to the variables (points within an NMR spectrum). I would like to carry out some kind of clustering on these data to see how many clusters are there. I have tried the function clara() from the package cluster. If I use the matrix as is, I can perform the clara

Hello, I am trying to execute an example provided in the help files for the playwith() function. I try to execute the first example: library(playwith) if (interactive()) { options(device.ask.default = FALSE) ## Scatterplot (Lattice graphics). ## Labels are taken from rownames of data. ## Just click on the plot to identify points. playwith(xyplot(Income ~ log(Population / Area), data =

Hello, Is there an easy way to compile a package so that it can be installed as a binary file under Windows? Now I have the source code. I am not used in compiling, and the documentation seems too hard for me, so an easy way would be great. Best regards, Dani -- Daniel Valverde Saub? Grup de Biologia Molecular de Llevats Facultat de Veterin?ria de la Universitat Aut?noma de Barcelona