similar to: oligo ids

Thanks Sean! Your reply was very helpful. I already got almost what I wanted. I have some NA values but I will look if I can find them through bibliography or an external tool. Best Regards, Eleni On Mon, May 19, 2008 at 6:07 PM, Sean Davis <sdavis2@mail.nih.gov> wrote: > On Mon, May 19, 2008 at 10:47 AM, Eleni Christodoulou > <elenichri@gmail.com> wrote: > > Dear list,

> I have a code that has several probes with the same probename. When I define the probe to use a translator and then try to match for all the occurances of the probename in a D script I get the following error: > > dtrace: invalid probe specifier mpi__test$target:::RECV_REQ_ACT_EV { printf("%d %d", args[0]->bar, args[0]->baz); }: in action list: args[ ] may not be

Dear Help, After loading the pd.Citrus library and checking the DataFrame, I ran > the R code for: > > 1) 'oligo' > > > > {> library(pd.citrus) > Loading required package: RSQLite > Loading required package: DBI > > data(pmSequence) > > > show(pmSequence) > DataFrame with 341730 rows and 2 columns > fid sequence > <integer>

Hi, I am a Ph.D. student from Québec, Canada. I’m a beginner with R and Bioconductor. Until now the only experience I have is in analyzing microarray data using affy and limma packages. Now I am trying to analyze Rat Gene 10 st arrays and I would like to run RMA analysis and Smyth moderated t test on those arrays. Since no cdf official package is available for those arrays, after reading many

Dear All, I am analyzing the miRNA data set in which I have 817 unique probes for each they have 20 features each . I have to group the similar features and take the median across them so that I have a data with no repeats to perform invariant analysis . My data looks something similar format probename sample1 sample2 sample3 A 2.3 2.4 2.5 A

[Perhaps someone could rename this list to dtrace-matt-problems-discuss?] If I run this script against my binary (which contains a USDT probe called ''concurrentq-latency''): ::: / probename == "concurrentq-latency" / { printf("[%s]:[%s]:[%s]\n", probeprov, probefunc, probename); } I get this output: dtrace: script ''testq.d'' matched 46056

[1] Predicates in one-liners I would like to list the probe modules in my executable and then dynamically create a dscript to trace execution of those modules alone (by excluding the 3rd party and system libraries). I tried the below script without success. The conditional given in the predicate is not taking effect. Why is this so ? $ dtrace -ln ''pid$target:::

I have CEL files from Affymetrix Mouse Array 430_2 and am trying to get the the individual PM intensities (11 per gene) for each sample. I would like to write out this into a tab delimited text file. Where am I stalling? This is what I've done: Change dir(to where CEL files are saved) Data <- ReadAffy() eset <- rma(Data) write.exprs(eset, file="mydata.txt") With this I am

I am attempting to created colClasses for several tables, then read only specific columns. There are two different table layouts that I am working with. If I use exclusively one layout, the script works perfectly, but if I mix the layouts, it fails to grab the correct columns form layout that is read in second. It appears that colClasses fails to adopt the new structure after the first iteration.

Hi, I''ve a b81 server running for a while. I''ve done all sorts of Python related stuff on it (nothing amazing, mostly compiled python2.5 and iPython in /usr/local), and now am trying to use it with xVM to install Windows on a virtual machine in it. I''m having trouble creating the new machine, and I get a blank error response like so when I try to do it:

I wrote a simple c programme and do some dtrace test. the progromme shows below(write.c): /////////////////////////////// #include<stdio.h> #include <sys/types.h> #include <sys/stat.h> #include <fcntl.h> char *value="hello,my name is wanjm\n"; void main() { int fd; fd=open("/export/home/wanjm/temp/read.txt",O_RDWR|O_CREAT); while(1) {

Dear R-Helpers, I have a data.frame (df) and the head of data.frame looks like ProbeUID ControlType ProbeName GeneName SystematicName 1665 1577 0 pSysX_50_22_1 pSysX_50 pSysX_50 5422 5147 0 pSysX_49_8_1 pSysX_49 pSysX_49 4042 3843 0 pSysX_51_18_1 pSysX_51 pSysX_51 3646 3466 0 sll1514_0_2 sll1514 sll1514