similar to: Opening more than 1 R console in Windows

Dear list, I realised by chance when analysing a 1521862 ? 8 matrix that plotting was much faster when using "." as the argument of `pch'. I was just wondering if there were other ways to get this speed improvement: it is otherwise quite difficult to explore such big matrices, especially given that X11 redraws the plot whenever its window is covered/uncovered by another window, or

Hi! I am using R version 2.7.0 and am working on a panel dataset read into R as a dataframe; I call it "ex". The variables in "ex" are: id year x id: a character string which identifies the unit year: identifies the time period x: the variable of interest (which might contain NAs). Here is an example: > id <- rep(c("A","B","C"),2) >

Hi gang, I always open more than 1 R console in Windows. I can't figure out a way to do this with OS X yet. I need that to utilize the duo core on my desktop. How would I do that? -- Regards, Anh Tran [[alternative HTML version deleted]]

Hi, Here's the data we have: > rs[1:5,] probe_id f1 f2 f3 f4 M A f 1 A_68_P20002076 2 58 0 0 1.51778114 6.344453 59 2 A_68_P20002775 22 8 15 0 0.43419304 5.488819 59 3 A_68_P20005791 43 3 0 0 0.05698666 9.830594 59 4 A_68_P20005805 11 34 0 0 1.71076835 6.624038 59 5 A_68_P20006729 16 44 0 0 0.85498261 6.044229 59 I want rs$f be the max of f1, f2, f3,

hi netters I have a rather simple question. I have a data frame with two variables X and Y, both of which are factors. X has 100 levels while Y has 10 levels only. The data frame has 100 rows in all, so for X the values are unique, and Y has many replicate values. Now I wanna reduce the data frame into 10 rows only, according to the 10 levels of Y. I don't care which value of X is in

I'm trying to use combine c('a','b','c','a','c') into 'a, b, c', the order does not matter. paste(c('a','b','c','a','c'), collapse=', ') yields 'a, b, c, a, c'. Any idea? -- Regards, Anh Tran [[alternative HTML version deleted]]

Hi all, What parameter should I feed to the hist function to draw a line, not bar graph for a histogram? Smoothed line would be great too. I've looked at curve() for normal distribution but it's not what I need. I need some curve on top of the histogram (fit to the actual data). Just as a way to illustrate, rather than bargraph. Thanks -- Regards, Anh Tran UCLA NeuroOncology Lab

Dear list, I hope it is not a FAQ, but I searched the archives and Google, and found nothing. The question is simple : I do not understand why, starting from a symmetrical correlation matrix, heatmap produces an asymmetrical image. Best, Charles -- Charles Plessy, Ph.D. - Genome Science Laboratory The Institute for Physical and Chemical Research (RIKEN) 2-1 Hirosawa, Wako, Saitama 351-0198,

Hi, Is there away to print a short table out along side with a plot? I'm thinking about doing a par(mfrow = c(1,2)) Then, the plot is on one side, summary result on the other. Is there any quick way to print out a data.frame in table format? Thanks -- Regards, Anh Tran [[alternative HTML version deleted]]

Hi all, I'm putting a few plots together and wondering what format would be best to export a few scatter plots to Illustrator to make a figure. I'm thinking about overlaying some plot in Illustrator, so the export file type has to be transparent for Illustrator (version 10). I tried PNG and TIFF, but it does not seems to have transparency that is recognized by Illustrator (or Photoshop for

I have read in Paul Murrell's book R Graphics about how to use a bitmap as background for a plot (page 107). Also, I routinely use function read.shape() in package maptools to read maps in shapefile format. Now, I would like to overlay an aerial photograph in .jpg format and a map. I think I could do the alignment manually for each case, but wonder if there is a better, automated way. I notice

Hi, Let say I have this matrix: > mat<-matrix(cbind(rnorm(20),rnorm(20)), ncol = 2) And I want to rescale values of column [,1] and [,2] using values from row 1 to 5, such that the values of row 1:5 should be rescale to the same amplitude (kinda like take the z-score of population from row 1:5). column 1 and 2 are two different samples need to be compared. I hope I made myself clear

Hi, What's one way to convert an integer to a string with preceding 0's? such that '13' becomes '00000000013' to be put into a string I've tried formatC, but they removes all the zeros and replace it with blanks Thanks -- Regards, Anh Tran [[alternative HTML version deleted]]

Hi all,I know this topic has came up multiple times, but I've never fully understand the apply() function. Anyway, I'm here asking for your help again to convert this loop to apply(). I have 2 data frames with the following information: a1 is the fragment that is need to be covered, a2 is the probes that cover the specific fragment. I need to count the number of probes cover every given

I've made an LDA model on some data from one source. I have some new data that I want to see if I can "place" to the sources in the LDA model. I used the predict function as follows: predict(wak.insitu.ld, wak.alr.alluvial) where wak.insitu.ld is an LDA model generated from some data and wak.alr.alluvial is new data of similar origin. When I look at the results, there is 86

Dear colleages in R, I have earlier been working with R in Linux, where reading in a table containing Scandinavian letters ("?", "?", and "?") in the header as part of variable names has not caused any problem whatsoever. However, when trying to do the same in R running on new MacOS-X (with an Intel processor) with the same original text table does not seem to

I applied the patch Gene wrote here: https://github.com/triton/nixpkgs/commit/06e146b2ce5eaaa54ebea061dd5797f89ae2c37c The tree after that commit is entirely based on gcc5. In order to do a test with gcc4.9, I reverted: https://github.com/triton/nixpkgs/commit/8ccc1f121f379f4d66ce0a66f581c49d25fb4e15#diff-d7222640d82ff920625e9311d05a0137 and then built two images, one entirely based on gcc4.9

Hello everybody, by the way, speaking about the r-cran-rcurl package in Ubuntu, the versions in trusty and vivid are linked by error to the "NSS" flavour of libcurl3 instead of the "OpenSSL flavour", which cause at least problems when using the CRAN devtools package. A bit more details are available in the Debian bug tracking system (https://bugs.debian.org/786473). I am not

Dear all, I am so ashamed to pollute the list with a trivial question, but it is a long time I have not used R, and I need a result in the next one or two hour... I have a table which I have loaded with read.table, and I want to make the mean of its columns. > slides <- read.table("slides.txt") > slides [1:5,] V1 V2 V3 V4 V5 V6 V7 V8 1

Dear all, I wrote the following batch script on a iMac, and ran it on a linux mosix cluster. tu <- read.table("cage.mm5.tags.rna_lib.CAA-CAJ.tu-reshape.table") tu_reshaped <- t(reshape(tu[1:50,], direction="wide", timevar="tu", idvar=c("rna","lib"))) write.table(tu_reshaped, "cage.mm5.tags.rna_lib.CAA-CAJ.tu-reshaped.table")