similar to: Problems using rfImpute

Hello R-user! I am running R 2.7.0 on a Power Book (Tiger). (I am still R and statistics beginner) I try to find the most important variables to divide my dataset as given in a categorical variable using randomForest. Is randomForest() able to deal with count data? Or is there no difference because only the ranks are used in the trees? Thanks in advance Birgit Birgit Lemcke Institut f?r

I am having trouble with the rfImpute function in the randomForest package. Here is a sample... clunk.roughfix<-na.roughfix(clunk) > > clunk.impute<-rfImpute(CONVERT~.,data=clunk) ntree OOB 1 2 300: 26.80% 3.83% 85.37% ntree OOB 1 2 300: 18.56% 5.74% 51.22% Error in randomForest.default(xf, y, ntree = ntree, ..., do.trace = ntree, : NA not

In trying to execute this line in R (Version 1.7.1 (2003-06-16), under windows XP pro), with the randomForest library (about two weeks old) loaded, the program crashed: bost4rf <- rfImpute(TargetDensity~.,data=bost4rf0) Specifically, an XP dialog box popped up, saying ?R for windows GUI front-end has encountered a problem and needs to close.? That was the dialog saying asking whether I

Hello, (Power Book G4, Mac OS X, R 2.5.0) I would like to repeat the function range for 85 Vectors (V1-V85). I tried with this code: i<-0 > repeat { + i<-i+1 + if (i<85) next + range (Vi, na.rm = TRUE) + if (i==85) break + } I presume that the Vi is wrong, because in this syntax i is not known as a variable. But I don´t know how to say that it is a variable here. Would be nice if

Hello and sorry that I still haven?t found a solution for my problem. I need to extract the lower and upper triangle from a square matrix including the diagonal. This diagonal is not zero in that special case. I tried with as.dist w<-as.dist(w, diag = TRUE) > w 1 2 3 4 5 1 0 2 2 0 3 3 8 0 4 4 9 14 0 5 5 10 15 20 0 but found no way to keep the diagonal that is in the

Hi, In R, how to do missing value replacement for test data in randome forest in the way Breiman decribed. thanks in advance iris

Hi all, I am using the package "random forest" for random forest predictions. I like the package. However, I have fairly large data sets, and it can often take *hours* just to go through the "na.roughfix" call, which simply goes through and cleans up any NA values to either the median (numerical data) or the most frequent occurrence (factors). I am going to start

I think it is an easy question but i haven´t found a solution since I am r beginner. I did this plot3d(PCoA, type="p", col=rainbow(1000),size=5) text3d(PCoA, text=Nam) How can I save it including the labels to a jpg-file? Thanks in advance. Birgit Birgit Lemcke Institut für Systematische Botanik Zollikerstrasse 107 CH-8008 Zürich Switzerland Ph: +41 (0)44 634 8351

So I have a very big matrix of about 900 by 400 and there are a couple of NA in the list. I have used the following functions to impute the missing data data(pc) pc.na<-pc pc.roughfix <- na.roughfix(pc.na) pc.narf <- randomForest(pc.na, na.action=na.roughfix) yet it does not replace the NA in the list. Presently I want to replace the NA with maybe the mean of the rows or columns or

Dear All, I would like to use a randomForest algorithm on a dataset. The set is not particularly large/difficult to handle, but it has some missing values (both factors and numerical values). According to what I found https://stat.ethz.ch/pipermail/r-help/2005-September/078880.html https://stat.ethz.ch/pipermail/r-help/2007-January/123117.html

Hi, I'm running a Mailserver, and recently also a Mailinglist. I'm sporting # dovecot --version 2.1.7 on a debian stable machine with postfix & mailman. Everything works fine, except that no archive is being created (here an excerpt from my log): Jul 2 15:29:39 blade01 postfix/qmgr[5217]: B30BCE1F52: from=<list at mail.myserver.com>, size=802, nrcpt=1 (queue active)

Hello, I want to fit a Gompertz model for tree diameter growth that depends on a 4 levels edaphic factor (?Drain?) and I don?t manage to introduce the factor variable in the formula. Dinc is the annual diameter increment and D is the Diameter. >treestab > Dinc D Drain [1,] 0.03 26.10 2 [2,] 0.04 13.05 1 [3,] 0.00 24.83 1 [4,] 0.00 15.92 4

Hello server administrator, Continued attempts to use the llvm demo end with Internal Server Error since Saturday. Mit freundlichen Grüßen aus Bremen Laurence R. Earp [cid:420252410 at 22022010-2236] <http://www.bvi.de/> + Erleben Sie Grand Central sowie tradesignal live an unserem Stand 14 + [cid:420252410 at 22022010-223D] Intalus GmbH Wilhelm-Herbst-Str. 7 D-28359

Dear R users, I've just released a new version of randomForest (available on CRAN now). This version contained quite a number of new features and bug fixes, compared to version prior to 4.0-x (and few more since 4.0-1). For those not familiar with randomForest, it's an ensemble classifier/regression tool. Please see http://www.math.usu.edu/~adele/forests/ for

Dear R users, I've just released a new version of randomForest (available on CRAN now). This version contained quite a number of new features and bug fixes, compared to version prior to 4.0-x (and few more since 4.0-1). For those not familiar with randomForest, it's an ensemble classifier/regression tool. Please see http://www.math.usu.edu/~adele/forests/ for

On Sat, 2011-10-29 at 14:02 -0500, Hal Finkel wrote: > On Sat, 2011-10-29 at 12:30 -0500, Hal Finkel wrote: > > Ralf, et al., > > > > Attached is the latest version of my autovectorization patch. llvmdev > > has been CC'd (as had been suggested to me); this e-mail contains > > additional benchmark results. > > > > First, these are preliminary

On Sat, 2011-10-29 at 15:16 -0500, Hal Finkel wrote: > On Sat, 2011-10-29 at 14:02 -0500, Hal Finkel wrote: > > On Sat, 2011-10-29 at 12:30 -0500, Hal Finkel wrote: > > > Ralf, et al., > > > > > > Attached is the latest version of my autovectorization patch. llvmdev > > > has been CC'd (as had been suggested to me); this e-mail contains > >

Hi, I've run many time e2fsck, but in a special dir ls tells me: ls: rücksendung-wlan.dvi: No such file or directory ls: bafög_rückmeldung.latex: No such file or directory ls: finprüf.pdf: No such file or directory $ cat finprüf.pdf cat: finprüf.pdf: Datei oder Verzeichnis nicht gefunden I don't know what to do? How can I find the failure? If I cat the files with debugfs, I see the

Ralf, et al., Attached is the latest version of my autovectorization patch. llvmdev has been CC'd (as had been suggested to me); this e-mail contains additional benchmark results. First, these are preliminary results because I did not do the things necessary to make them real (explicitly quiet the machine, bind the processes to one cpu, etc.). But they should be good enough for discussion.

On Sat, 2011-10-29 at 12:30 -0500, Hal Finkel wrote: > Ralf, et al., > > Attached is the latest version of my autovectorization patch. llvmdev > has been CC'd (as had been suggested to me); this e-mail contains > additional benchmark results. > > First, these are preliminary results because I did not do the things > necessary to make them real (explicitly quiet the