similar to: RSQLite error

Dear cateGOry experts, hyperGTest documentation states that YEAST cannot be used as 'annotation' when evaluating gene ontology representation status for a given set of 'geneIds'. Because I am using a custom print I believe I need to create my own data package to use as the annotation file for 'annotation'. Can someone please describe how to make a data package that will

Hi All, I tried to install AnnotationDBI like so: source("http://bioconductor.org/biocLite.R") biocLite("AnnotationDbi") and got this error: .... Loading required package: RSQLite Error in dyn.load(file, ...) : unable to load shared library '/RHEL3/local/lib64/R/library/ RSQLite/libs/RSQLite.so': /RHEL3/local/lib64/R/library/RSQLite/libs/RSQLite.so: undefined

Hi, R-help group, I kinda meeting a question when using R-2.12.0(Previous version is 2.10.0): When I typed "library("Biobase")", everything is alright! But when I type "library("genefilter")", it doesn't work! And echo this: Error in library.dynam(lib, package, package.lib) : DLL 'RSQLite' not found: maybe not installed for this

Dear R experts, I'm trying to install rgdal in my R 2.11.1 (Ubuntu 10.10). I have as an ouput the following messages. It seems that there are problems with libgdal1.7.0 or sqlite3... Could someboby help me? Thanks a lot! Ale > install.packages() Warning in install.packages() : argument 'lib' is missing: using '/home/ale/R/i686-pc-linux-gnu-library/2. 11' trying URL

Hi, I am a Ph.D. student from Québec, Canada. I’m a beginner with R and Bioconductor. Until now the only experience I have is in analyzing microarray data using affy and limma packages. Now I am trying to analyze Rat Gene 10 st arrays and I would like to run RMA analysis and Smyth moderated t test on those arrays. Since no cdf official package is available for those arrays, after reading many

Hi folks, Ubuntu 10.04 64 bit Where can I find 64 bit RSQLite? It seems not there; RSQLite: SQLite interface for R http://cran.r-project.org/web/packages/RSQLite/index.html TIA B.R. Stephen L

Please let me know where i have to type below thing to RSQLite database get installed.Please let me know the solution.Thanks in advance RSQLite -- Embedding the SQLite engine in R (The RSQLite package includes a recent copy of the SQLite distribution from http://www.sqlite.org.) Installation ------------ There are 3 alternatives for installation: 1. Simple installation: R CMD

Dear all, I am trying to install RSQLite package since I want to install "sqldf", and I used >> install.packages("RSQLite") first, which gave Error message as below: make: *** [RS-DBI.o] Error 1 chmod: cannot access `/usr/lib/R/library/RSQLite/libs/*': No such file or directory ERROR: compilation failed for package 'RSQLite' ** Removing

Hi, On a fresh install of R on mac os x 10.6.4 (snow leopard) RSQLite did not install while running biocLite() $ R R version 2.11.1 (2010-05-31) Copyright (C) 2010 The R Foundation for Statistical Computing ISBN 3-900051-07-0 [...] Loading required package: utils BioC_mirror = http://www.bioconductor.org Change using chooseBioCmirror(). [Previously saved workspace restored] >

I'd like to search for a particular string in an SQLite database using RSQLite, but I'm running into problems constructing the query properly, because of embedded quotes and parens in the string. Is there a function that escapes these for me, or some other fixup that would let me do the queries below? In the real situation I don't have control over what strings get searched for.

Hi Folks, I'm new to the linux world and am having some trouble installing the RSQLite package. SQLite is installed, but some dependencies(?) seem to be missing. Can anyone help? > sessionInfo() R version 2.13.0 (2011-04-13) Platform: i686-pc-linux-gnu (32-bit) > install.packages() Installing package(s) into ‘/home/abraham/R/i686-pc-linux-gnu-library/2.13’ (as ‘lib’ is unspecified)

hello, if i load the RSQLite package in addition to the RPostgreSQL package, i get various errors when trying to use RPostgreSQL functions. here is an example transcript showing one such error: ========================================================== R version 2.15.0 (2012-03-30) [...] > packageVersion('RPostgreSQL') [1] 0.3.2 > packageVersion('RSQLite') [1] 0.11.1

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What am I doing wrong, or is the \r that I'm getting in the example below a bug? > a <- (1:10) > b <- (LETTERS[1:10]) > df <- as.data.frame(cbind(a, b)) > > df a b 1 1 A 2 2 B 3 3 C 4 4 D 5 5 E 6 6 F 7 7 G 8 8 H 9 9 I 10 10 J > library(RSQLite) > drv <- dbDriver("SQLite") > con <- dbConnect(drv, dbname = "Test")

What am I doing wrong, or is the \r that I'm getting in the example below a bug? > a <- (1:10) > b <- (LETTERS[1:10]) > df <- as.data.frame(cbind(a, b)) > > df a b 1 1 A 2 2 B 3 3 C 4 4 D 5 5 E 6 6 F 7 7 G 8 8 H 9 9 I 10 10 J > library(RSQLite) > drv <- dbDriver("SQLite") > con <- dbConnect(drv, dbname = "Test")

Happy new year, dear listers, I have a question about Rsqlite. when I fetch the data out of sqlite database, there is something like '\r\n' at the end of last column. Here is the example: Sepal_Length Sepal_Width Petal_Length Petal_Width Species 1 5.1 3.5 1.4 0.2 setosa\r\n 2 4.9 3.0 1.4 0.2 setosa\r\n 3

Seth, I encountered problems installing RSQLite, R-2.7.0, on RHEL4 using Intel 10.1 icc, My sysadmin helped me track down the problem and kindly forwarded me the fix, which corrected the problem. What follows is from the sysadmin. Mark I looked at the error, looks like there is a bug in the source code. I've attached a new tarball, hopefully fixed. I added #include <sys/types.h>

Hi, I'm experimenting with using (R)SQLite to do data management. Here are two little problems that I've encountered: 1. The presence of ',' in string values causes trouble since ',' is also the delimiter used in the SQL statement. 2. A newline '\n' line attached to the last string value of each row. Some examples: > library (RSQLite) Loading required

Hi All, I am trying to make write a table in RSQLite. And I get the error mentioned below mat<-as.data.frame(matrix(rnorm(n=244000000),nrow=244000,ncol=1000)) > dbWriteTable(con, "array", mat) [1] FALSE *Warning message: In value[[3]](cond) : RS-DBI driver: (error in statement: too many SQL variables)* Can someone please tell me what is maximum size of a table( max number of

Dear all, I'm trying to import a csv file into sqlite3 and from there into R. Everything looks fine exepct that R outputs the character values in an odd fashion: they are shown as "\"CHARACTER\"" instead of "CHARACTER", but only if I show the character variable as a vector. Does someone know why this happens? Below is a sample code. The first part is written in