similar to: missing packages from install

Hi R-users! I am trying to learn how to use the glmpath package. I have a dataframe like this > dim(data) [1] 605 109 and selected the following > response <- data[,1] > features<-as.matrix(data[,3:109]) > mymodel <- glmpath(features,response, family = binomial) Error in if (lambda <= min.lambda) { : missing value where TRUE/FALSE expected Reading the glmpath pdf, I

Full_Name: Uwe F. Mayer Version: 2.9.1 OS: SunOS myhost 5.10 Generic_120012-14 i86pc i386 i86pc Solaris Submission from: (NULL) (216.113.168.130) Standard configuration (that is, not specifying --without-recommended-packages) leads to the following error: gmake[2]: Leaving directory `/usr/local/opt/build/R-2.9.1/src/library' gmake[1]: Leaving directory

Hi, perhaps you can help me to find out, how to find the best Lambda in a LASSO-model. I have a feature selection problem with 150 proteins potentially predicting Cancer or Noncancer. With a lasso model fit.glm <- glmpath(x=as.matrix(X), y=target, family="binomial") (target is 0, 1 <- Cancer non cancer, X the proteins, numerical in expression), I get following path (PICTURE

Hello, I have a test file that runs OK with > Rterm.exe --no-restore < filename.R When I try > Rcmd BATCH filename.R I get the following error message: Can't locate R/Utils.pm in @INC (@INC contains: C:\PROGRA~1\R\rw1070\share\perl c:/Perl/lib c:/Perl/site/lib .) at C:\PROGRA~1\R\rw1070/bin/BATCH line 22. BEGIN failed--compilation aborted at C:\PROGRA~1\R\rw1070/bin/BATCH

..sorry for this "repeated" off-topic question, but i look for any suggestion in the manuals, find nothing related? library(Sjava) Error in firstlib(which.lib.loc, package) : JAVA_HOME is not set Error in library(Sjava) : .First.lib failed ...what i have to done? many thanks & regards,christian

Dear R-List member, I have installed the new version of R on my PC (see system details below). I can start the RGui with http_proxy succesfully. However, I do encounter two problems: 1) After starting the Rgui the following error message is displayed (vertical dots represent omissions of output): R : Copyright 2003, The R Development Core Team Version 1.7.0 (2003-04-16) . . . . Error in

Sir/Madam, I am a graduate student in Petroleum Engineering. I have a problem in using R and hope that you could help in solving that. I have a code in C, which displays orthogonal arrays when I give number of rows and number of columns to it. I have another code in R that calls this C code. I am very new to R. I downloaded the R and loaded packages base and mva. I also kept my C code .exe

Hello- I am trying to download packages from CRAN to my Window-based system. I downloaded the most recent version of Perl, as instructed in the Install Manual and the "car" package, just as a trial. Where should they "reside" within my computer: the unzipped Perl I have placed at ...R/rw1070; the "car" package I unzipped and placed at ...R/rw1070/library. Is this

I can successfully "check" a package with source under 2.5.1, including compiling source files and running examples with no errors or warnings. when I try with R2.6.2, I get make errors: making bayesmc.d from bayesmc.c make[3]:gcc-sjlj: Command not found etc. my gcc is version 3.4.2 I'm using Windows XP. Any thoughts? thanks! peter r ................................ Peter

Hi, I'm using dyn.load to load a shared library (compiled from C code) into R. If I dyn.unload it and then dyn.load it again, I get an hourglass icon in Rgui (R 1.7.0, Win 2000), and it just sits there forever. I can't press Escape to stop the current computation, but I can close Rgui without resorting to using the Task Manager. Is it a problem with my use of R_alloc? Do I need

library(glmpath) data(heart.data) # heart.data is a list, $y a vector, $x a matrix data <- data.frame(x=I(heart.data$x), y = heart.data$y) > data[1:2,] x.1 x.2 x.3 x.4 x.5 x.6 x.7 x.8 x.9 y 1 160 12 5.73 23.11 1 49 25.3 97.2 52 1 2 144 0.01 4.41 28.61 0 55 28.87 2.06 63 1 > dimnames(heart.data$x)[[2]] [1] "sbp"

I'm trying to use the biological female and male signs in R2.5.1 under Windows XP. I can access and insert these symbols using word-processors. In general these should be available as \u2640 and \u2642 but I can't make them happen in R using (say) text(5,5, "\u2640") message "invalid \uxxxx sequence" I've replaced Arial with Arial unicode MS in Rdevga and

With the current version (rw1070), every time I start R it loads a whole bunch of packages, many of which I do not need in a typical session: > search() [1] ".GlobalEnv" "package:methods" "package:ctest" "package:mva" [5] "package:modreg" "package:nls" "package:ts" "Autoloads" [9]

Hello, I haven't been able to find an example for the second case below -- or perhaps I didn't recognize it when I saw it. Is there a value for x such that svalue(x) will return "bbb", either by itself or as part of an array? Or do I need to do something else entirely? (R2.5.1; Windows XP) > #### gWidgets test > options("guiToolkit"="tcltk") >

Hi all, I am trying to install add-on in R (rw1070) to work with WinEdit. Libraries Swinregistry and Rwinedt have been installed via "Install Package(s) from local zip files" from R. However, when I run library(Rwinedt) I get the following messages: > library(Rwinedt) Loading required package: SWinRegistry Error in loadNamespace(name) : package `methods' does not have a name

Hi Claire, I'm replying and CC-ing to the R-help list to get more eyes on your question since others will likely have more/better advice, and perhaps someone else in the future will have a similar question, and might find this thread handy. I've removed your specific research aim since that might be private information, but you can include that later if others find it necessary to know

I am new to R. I just installed R2.5.1 in my computer and tried to use coxph, but it gives me this message: No documentation for 'coxph' in specified packages and libraries: you could try 'help.search("coxph")' can anyone tell me how to install this package? thanks a lot [[alternative HTML version deleted]]

Hi, I would like to run R2.5.1 in Ubuntu feisty on an AMD64 chip. I am a total newbie to Linux. I have successfully compiled 2.5 however, I am not able to figure out how to upgrade the packages. I am not able to find an R-base-core_2.5.1-1_amd64 or all on the CRAN mirrors. I can find one on the Ubuntu feisty site, however when I try to install it I get a warning that Dependency is not stisfiable:

Dear R-users, In R 2.5.1 on Windows XP, SP2 the call to phyper(0,0,74,3,lower.tail=FALSE) returns -4.195862e-17. This does not happen with R2.5.1 on Linux, 0 is returned. Is this a bug (and should be reported as such), since phyper should not return negative values, or is this considered as one of the annoyances of finite precision arithmetic. I tend to think of this as a bug since it breaks the

I am having trouble using R routines from the RExcel add-in, that use lapack.dll. As an example if I start the R kernel from within Excel and execute "x<-rbind(c(1,2),c(1,-1)) z<-solve(x)", I get the following error: "Error in solve.default(x): lapack routines could not be loaded. In addition: Warning message: unable to load shared library "C:\Program