similar to: Installing packages from command line on Linux RHEL4

Dear R devels, let's say I have three packages "pkg1", "pkg2" and "pkg3" which all contain new S4 classes and methods. Where "pkg3" depends on "pkg2" and "pkg2" depends on "pkg1". Moreover, all three packages have namespaces. 1) I use ".onLoad <- function(lib, pkg) require(methods)". Do I also have to

I am trying to re-organizing my Makefile for testing my R packages and I am having trouble finding a structure I like. The problem seems to be that "R CMD check", which does wonderful things, does not allow dependency information to flow through very gracefully. That is, since everything is copied into the pkg.Rcheck directory, it is difficult to make any changes to source files without

I am being asked to modernize the Depends line in the DESCRIPTION file of some packages. Writing R Extensions says: The general rules are Packages whose namespace only is needed to load the package using library(pkgname) must be listed in the ?Imports? field and not in the ?Depends? field. Packages listed in imports or importFrom directives in the NAMESPACE file should

Hi, hopefully this hasn''t been discussed too often, haven''t found anything in the group: I''m having some issues when a package gets installed twice ( x86 & x64 version). #system is a RHEL5/x64 system. *#following manifest:* [root@kermit ~]# cat install_expect.pp package { ''expect'': ensure => present, } *#ok, let''s apply*

Hi, 'R CMD INSTALL -l' will stop if some error is encountered. I don't find in the manual an option to keep the command running. Is there such an option? -- Tom

Hello! I have a wish/proposal. Is it possible to include some option in install.packages() for Delete downloaded files (y/N)? at the end of that process. It can be quite anoying if you must install several packages and wait meanwhile to type y/n for each package separately. -- Lep pozdrav / With regards, Gregor GORJANC ---------------------------------------------------------------

I've finally made the switch to CentOS 5.1 (I had been running 4.6). So far, so good, but I do have a few issues. First, I can not find kermit (or ckermit) in any of the repos (base, extras, centosplus, rpmforge). On my 4.6 systems, /usr/bin/kermit was provided by the package ckermit in the base repo. That package appears to be no longer available. Any ideas where I could find a

Hi! I'm new to this list as well to Wine, so please excuse me if I'm asking a FAQ. Today I installed wine-20011108, especially to be able to run programs I need for my work. One of them is a remote front panel to the measuring instrument, which communicates with it using a modem connection. This program cannot establish a connection. It accesses the modem, its LEDs blink, but no

On Mon, 8 Aug 2016 18:38:49 +0200 Pino Toscano <ptoscano@redhat.com> wrote: > Implement the 'remove', 'file_list_of_package', and 'file_owner' methods > of the Linux module for the "deb" package manager (dpkg basically, on > Debian and derived distributions). > > Also allow it for the main conversion code. > --- >

Hi, It feels like I should be able to do something like: R CMD INSTALL lib='/usr/lib64/R/library' repos='http://proxy.url/cran' package We have a bunch of servers (compute nodes in a Rocks cluster) in an isolated subnet, there is a basic pass-through proxy set up on the firewall (the head node) which just passes HTTP requests through to our nearest CRAN mirror. when using

Hi, is it intended that one cannot install packages in non-interactive mode, without explicitly setting a CRAN mirror (see below)? Couldn't a default mirror be used in that case? Thank you. Bests, Renaud $ Rscript --vanilla -e "install.packages('whatever')" Installing package into '/home/renaud/R/x86_64-pc-linux-gnu-library/3.0' (as 'lib' is unspecified)

On Tue, 21 Jul 2020 at 11:05, Jos? Ab?lio Matos <jamatos at fc.up.pt> wrote: > > On Friday, 3 July 2020 18.36.17 WEST I?aki Ucar wrote: > > Nice! What if we create a group "R" on Pagure and a repo > > "fedora-scripts" or something like that? > > I would like to improve the scripts but FWIW here it comes a rough version of > the script I used.

Hi, Thanks, everyone for all the help! So, here is my calling function in C (called test.c): #include<stdio.h> #include<stdlib.h> #include<Rmath.h> int main(void) { printf("%f \n",pchisq(2.,7., 1, 0)); printf("%f \n",pnchisq(2.,7.,0., 1, 0)); return EXIT_SUCCESS; } I compile using: gcc test.c -I/usr/lib/R/include

I installed some downloaded packages in R. I always do $sudo R CMD INSTALL <anRpackage.tar.gz> By default it is storing these packages into my directory /home/mary/R/x86_64-pc-linux-gnu-library/2.13/. However I want them to be systemwide into /usr/local/lib/R/site-library/ folder. I tried $sudo R R> install.packages("anRpackage", dep=TRUE) I did not succeed into getting

I installed some downloaded packages in R. I always do $sudo R CMD INSTALL <anRpackage.tar.gz> By default it is storing these packages into my directory /home/mary/R/x86_64-pc-linux-gnu-library/2.13/. However I want them to be systemwide into /usr/local/lib/R/site-library/ folder. I tried $sudo R R> install.packages("anRpackage", dep=TRUE) I did not succeed into getting

Full_Name: Benjamin Tyner Version: 2.3.0 OS: linux-gnu (debian) Submission from: (NULL) (71.98.75.54) > mean(NA) returns -2147483648 on my system, which is -(1+.Machine$integer.max) > sessionInfo() Version 2.3.0 (2006-04-24) i686-pc-linux-gnu attached base packages: [1] "methods" "stats" "graphics" "grDevices" "utils"

Sorry, forgot to switch the header to the R group.... --- Globe Trotter <itsme_410 at yahoo.com> wrote: > Date: Thu, 2 Mar 2006 19:35:21 -0800 (PST) > From: Globe Trotter <itsme_410 at yahoo.com> > Subject: Re: [R] calling R's library using C > To: Dirk Eddelbuettel <edd at debian.org> > > Hi, Dirk: > > Thanks for all the help. I thought I would

Hello, dear R experts! I run R on Debian 'sarge' platform. There is 'r-mathlib' package in Debian distribution, which is described as: $ dpkg --status r-mathlib ... This packages provides the libRmath shared and static libraries which can be called from standalone C or C++ code. Well, I use runif() function in test_runif.c: #include <Rmath.h> main() { // ...

Hi, On a freshly installed RedHat RHEL 5.1 x86 with quota-3.13-1.2.3.2.el5.rpm I can't compile neither dovecot 1.0.7 nor 1.1beta8 : $ ./configure --with-linux-quota && make [...] gcc -DHAVE_CONFIG_H -I. -I. -I../../.. -I../../../src/lib -I../../../src/lib-dict -I../../../src/lib-index -I../../../src/lib-mail -I../../../src/lib-storage -I../../../src/lib-storage/index

Hello, I have an application that sends data out to a serial port, then should receive the reply. After some hassles I got the application to enumerate the serials (in a dialog box where you select the port), and after creating the link in dosdevices (in lower case I should note, wine will not recognize COM1) it actually starts sending out data (verified using a terminal on the other end). But