Displaying 20 results from an estimated 3000 matches similar to: "Compilation of source package."
2009 Apr 27
2
The .tex version of the manual in foo.Rcheck
In version 2.8.1, running Rcmd check on the package foo would leave the file foo-manual.tex in the folder foo.Rcheck.
But as of 2.9.0 only foo-manual.pdf and foo-manual.log are there.
Is this intentional?
Anyway it is inconvenient, because I would occasionally like to include the manual at the end of a set of exercises, and this was a convenient file to \input with a few select %'s added.
2010 Jan 12
1
The TeX-source for the package manual.
I have noted that the later versions of Rcmd check cleans out the directory pkg.Rcheck so that only package-manual.log and package-manual.pdf are left.
Formerly the package-manual.tex was around too --- very handy for various purposes.
Is there a way to generate the .tex - version of the manual for a package?
br.
Bendix
______________________________________________
Bendix Carstensen
Senior
2008 Jun 18
1
Error in bugs.run -- R2WinBUGS
Hi,
I tried to use MethComp library and this library make use of the WinBUGS
by R2WinBuGUS,
but I get the follow error in bugs.run:
*Error in bugs.run(n.burnin, bugs.directory, WINE = WINE, useWINE =
useWINE, : *
Look at the log file and
try again with 'debug=TRUE' to figure out what went wrong within Bugs.
Anyone can help-me, please?
Thanks
Cleber
library( MethComp )
library(
2008 Dec 14
2
Help required to install package from a website
Hi,
I am new to R and I'm looking to perform some method comparison
analysis and would be grateful for some help regarding package
installation.
There is a package 'MethComp' that I want to use
(http://staff.pubhealth.ku.dk/~bxc/MethComp/Courses/Sthm.2007/.)
Unfortunately I am unable to install it. I have tried numerous
approaches but to no avail. this is the first time I have tried to
2008 Jul 29
2
FW: Installing BRugs
A funny thing happened when I wanted a student of mine to install Brugs.
Using the InstallPackages in the windows version, firts gives an erro, but trying again works flawlessly.
R version is 2.7.0 on WinXP.
Any explanation?
Bendix Carstensen
______________________________________________
Bendix Carstensen
Senior Statistician
Steno Diabetes Center
Niels Steensens Vej 2-4
DK-2820 Gentofte
2004 Nov 03
1
Building a package under WIN2000 / rw2.0
I have an odd problem in building a package with only R-code in it.
I have a package mainly used by myself which I last build under R
1.9.0.
The operation system is Win2000 5.00.2195, Service Pack 3
When I do:
c:\stat\r\rw2000\bin\Rcmd install --docs=normal --build
--library=c:\stat\R\bxc\library c:\stat\R\bxc\library.sources\xx
then after updating help pages I get:
preparing package xx for
2004 Nov 03
1
Building a package under WIN2000 / rw2.0
I have an odd problem in building a package with only R-code in it.
I have a package mainly used by myself which I last build under R
1.9.0.
The operation system is Win2000 5.00.2195, Service Pack 3
When I do:
c:\stat\r\rw2000\bin\Rcmd install --docs=normal --build
--library=c:\stat\R\bxc\library c:\stat\R\bxc\library.sources\xx
then after updating help pages I get:
preparing package xx for
2008 Nov 24
1
FW: read.ssd
Did not seem to reach Saikat DebRoy, this might be the forum.
Bendix
-----Original Message-----
From: BXC (Bendix Carstensen)
Sent: 24. november 2008 15:00
To: 'saikat at stat.wisc.edu'; 'stvjc at channing.harvard.edu'
Subject: read.ssd
It's always annoyed me that that read.ssd crashed on datasets with long variable names, but the other day a collegue of mine pointed out to
2007 Jun 11
2
Rounding?
I was a bit puzzed by:
> formatC(6.65,format="f",digits=1)
[1] "6.6"
So I experimented and found:
> formatC(6.6500000000000001,format="f",digits=1)
[1] "6.6"
> formatC(6.650000000000001,format="f",digits=1)
[1] "6.7"
> round(6.6500000000000001,1)
[1] 6.7
> round(6.650000000000001,1)
[1] 6.7
> version
2004 May 24
2
Month names
This is how I get the month names from within R:
> mon <- rep(strptime("01/01/1952", format = "%d/%m/%Y"), 12)
> mon$mon <- mon$mon + 0:11
> mnam <- months(mon, abbreviate = F)
> mnam
[1] "januar" "februar" "marts" "april" "maj" "juni"
"juli" "august"
2004 Mar 02
3
Margins on tables
It has long been a nuisance to me not being able to form margins on
multiway tables in a simple fashion, so i wrote margins().
In my opinion it should go into the base package. The code and the
documentation is in:
http://www.biostat.ku.dk/~bxc/R/margins/
Please help yourself, and enhance and rename as you see fit.
Bendix
----------------------
Bendix Carstensen
Senior Statistician
Steno
2010 Apr 17
1
Fishy error with NAMESPACE when checking package
I am updating the Epi package.
I added functions named pc.points and pc.matpoints.
Erroneously I wrote pc.plot and pc.matplot in the NAMESPACE file and of course got an error from Rcmd check.
So I corrected the NAMESPACE file, but I still get from r-check:
* install options are ' --no-html'
Loading required package: utils
Error in namespaceExport(ns, exports) :
undefined exports:
2008 May 18
1
Figure environment and includegraphics options from Sweave
Tha handy thinb about the fig=TRUE option in Sweave is that you do not
have to bother about filenames and starting and stpping the device.
I want the the resulting LaTeX to look as:
\begin{Schunk}
\begin{Sinput}
> x <- seq(-2 * pi, 2 * pi, 0.1)
> plot(x, cos(x), type = "l", lwd = 4)
\end{Sinput}
\end{Schunk}
\begin{figure}
\includegraphics[width=0.6\textwidth]{xx-001}
2005 Feb 17
1
How to get interction terms first in a model
Consider the following two specifications of a model:
library( splines )
x <- 1:100
y <- rnorm( 100 )
w <- rep( 1, 100 )
A <- factor( sample( 1:2, 100, replace=T ) )
B <- factor( sample( letters[1:4], 100, replace=T ) )
summary( lm( y ~ ns( x, knots=c(30, 50, 70 ), intercept=T ):A - 1 + B )
)
summary( lm( y ~ ns( x, knots=c(30, 50, 70 ), intercept=T ):A - 1 + B:w
) )
The
2011 Jul 16
2
Sweave in 2.13.1
I run Windows XP.
and in a command window I get:
> c:\stat\r\R-2.13.1\bin\i386\Rcmd Sweave Lexis.rnw
Error in length(arg) : 'arg' is missing
Calls: <Anonymous>
Execution halted
AND:
> c:\stat\r\R-2.13.1\bin\i386\Rcmd Sweave --help
Error in length(arg) : 'arg' is missing
Calls: <Anonymous>
Execution halted
BUT:
> c:\stat\r\R-2.13.0\bin\i386\Rcmd Sweave
2005 May 21
2
print format for difftime
Has anyone written a function that will print a difftime in the form:
hh:mm:ss
or
yy-mm-dd hh:mm:ss
depending on the actual size.
(sloppy notation for months/minutes, but surely you get the point).
Bendix
----------------------
Bendix Carstensen
Senior Statistician
Steno Diabetes Center
Niels Steensens Vej 2
DK-2820 Gentofte
Denmark
tel: +45 44 43 87 38
mob: +45 30 75 87 38
fax: +45 44 43 07
2000 Feb 08
2
Windows metafile
Running
R : Copyright 1999, The R Development Core Team
Version 0.90.1 (December 15, 1999)
on NT 4.0 gives me problems with:
win.metafile(file="./x.emf")
x <- 1:100/7
plot(x,cos(x),type="n")
lines(x,sin(x))
abline(v=0:15,h=-2:2/2,col=gray(0.8))
Only labels and titles on axes are in the file.
No axes or lines of any kind. (I look at the file by
inserting it in Word,
2004 Sep 27
1
Funny behaviour of coef() and vcov() if X is singular
coef() and vcov() have different dimensions if a model contains alised
parameters
as the following example illustrates.
A search on "alised" gave noting as far as I could see.
Is this a known bug?
Bendix C
----------------------
Bendix Carstensen
Senior Statistician
Steno Diabetes Center
Niels Steensens Vej 2
DK-2820 Gentofte
Denmark
tel: +45 44 43 87 38
mob: +45 30 75 87 38
fax: +45
2004 Jan 08
3
Strange parametrization in polr
In Venables \& Ripley 3rd edition (p. 231) the proportional odds model
is described as:
logit(p<=k) = zeta_k + eta
but polr apparently thinks there is a minus in front of eta,
as is apprent below.
Is this a bug og a feature I have overlooked?
Here is the naked code for reproduction, below the results.
------------------------------------------------------------------------
---
version
2012 Feb 20
2
Computing plot size in Sweave
Sometimes you want to compute the physical size of a plot based on data.
In R itself this is no problem.
But is there a way to compute the values of height and width in S-weave, say:
<<graph,fig=TRUE,height=xx,width=yy>>=
where xx and yy are computed and not physically written in the document?
Bendix
______________________________________________
Bendix Carstensen
Senior