similar to: r error

Dear listers, I am trying to fit a model using nlsList() using alternately a SSfol() selfstart function or its developped equivalent formulae. This preliminary trial works well mydata<-groupedData(Conc~Tps|Organ,data=mydata) mymod1<-nls(Conc~SSfol(Dose,Tps,lKe,lKa,lCl),data=mydata) as well as a developped form: mymod2<-nls(Conc~Dose * exp(lKe+lKa-lCl) *

Dear list, I may have found a bug in model.frame.default (called by the lm function). The problem arises in my R dev version but not in my R 2.4.0. Here is my config : > version _ platform x86_64-unknown-linux-gnu arch x86_64

hi all i have a function that uses two inputs, say xdata and ydata. An example is the following, simple1<-function(xdata,ydata) { ofit<-lm(ydata~xdata) list(ofit) } say i use arbitray number for xdata and ydata such that D = x1 x2 y 1 1 10 2 6 6 3 10 7 x<-D[,1:2] and y<-D[,3] if one uses these inputs and rund the program we get the following: >simple(xdata=x,ydata=y)

I have been struggling with getting my Fedora 7 box set up to use dovecot with Squirrelmail and Maildir. It works correctly with the exception of writing outgoing mail to the right folder (.Sent) or drafts (.Drafts). If I send a mail with Mutt, it writes the mail to the right place, so it has to be squirrelmail config or dovecot config. I want to use .Sent for sent-mail (~user/Maildir/.Sent) and

Greetings List, I'm having some trouble with the use of the names function in a formula. Below is an example of something that works (i.e first line), and the second line is the same formula which doesn't. I want to be able to reference the column of the dataC table so I can run the variogram iteratively with a loop. > v<-variogram(A1~1,loc=~x+y, dataC) >

Pierre Legendre has developed a beta version of a new redundancy analysis package called RdaTest that is available on his web page at the Universit® de Montréal. The test example that is included with the package is based on the example provided in his book (Numerical Ecology, Chapter 11 (Legendre & Legendre 1998)) I have downloaded the package and am attempting to run it so that I might

Dear List-members, I found a strange behaviour in the lqs function. Suppose I have the following data: y <- c(7.6, 7.7, 4.3, 5.9, 5.0, 6.5, 8.3, 8.2, 13.2, 12.6, 10.4, 10.8, 13.1, 12.3, 10.4, 10.5, 7.7, 9.5, 12.0, 12.6, 13.6, 14.1, 13.5, 11.5, 12.0, 13.0, 14.1, 15.1) x1 <- c(8.2, 7.6,, 4.6, 4.3, 5.9, 5.0, 6.5, 8.3, 10.1, 13.2, 12.6, 10.4, 10.8, 13.1, 13.3, 10.4, 10.5, 7.7, 10.0, 12.0,

I am getting an error that I don't understand, and wonder if anyone could explain what's going on. I call a function defined thus: clogit.rds<-function(formula,data,extra.data,response.prob, na.action=getOption("na.action"),subset=NULL, control=coxph.control()){ method="exact" # only option for now mf<-match.call()

I'm trying to learn to use manova(), and don't understand why none of the following work: > data(iris) > fit <- manova(~ Species, data=iris) Error in lm.fit(x, y, offset = offset, singular.ok = singular.ok, ...) : incompatible dimensions > fit <- manova(iris[,1:4] ~ Species, data=iris) Error in model.frame(formula, rownames, variables, varnames, extras,

I tried this : > mosaicplot(stoc ~ q9r + segca,data=tmp2,color=T) : works fine. And now, this : > mosaicplot(stoc ~ q9r + segca, data=tmp2, color=T, main="Big title") Error in model.frame(formula, rownames, variables, varnames, extras, extranames, : invalid variable type I'm probably stupid and missed something simple in the manual (and wouldn't like to be

Dear helpers I'm having a problem with function HoltWinters from package ts. I have a time series that I want to fit an Holt-Winters model and make predictions for the next values. I've already built an object of class ts to serve as input to HoltWinters. But then I get an error; I've used HoltWinters a lot of times and this never hapened > data.HW<-HoltWinters(data.ts) Error

Greetings, I would like to use a cubic spline or smoother to model the fixed effects within nlme. So far the only smoother I have been able to get to run successfully in nlme is smooth(). I tried smooth.spline: fixed=list(lKa~1,lCL~smooth.spline(BSA, df=3)) the error I got was the following. Error in model.frame(formula, rownames, variables, varnames, extras, extranames, : invalid

Hi, I'm using a loop to evaluate several models by taking adjacent variables from my dataframe. When i try to get predictions for new values, i get an error message about a missing variable in my new dataframe. Below is an example adapted from ?gam in mgcv package library(mgcv) set.seed(0) n<-400 sig<-2 x0 <- runif(n, 0, 1) x1 <- runif(n, 0, 1) x2 <- runif(n, 0, 1) x3 <-

I'm getting the following error when trying to execute a glm() procedure: Error in model.frame(formula, rownames, variables, varnames, extras, extranames, : invalid variable type for 'response' The commands I'm using to import the *.csv files, construct the data frame, and run the glm procedure are below: response <- read.csv("Response.csv",

Hello, I have a problem concerning logistic regressions. When I add a quadratic term to my linear model, I cannot draw the line through my scatterplot anymore, which is no problem without the quadratic term. In this example my binary response variable is "incidence", the explanatory variable is "sun": > model0<-glm(incidence~1,binomial) >

I'm a bit confused about the nls package, I'm trying to use it for curve fitting. First off, the documentation for nls says ``see `nlsControl' for the names of the settable control values'' -- this is wrong, it should be nls.control (minor point but had me confused for a moment). Now I'll try something very simple (maybe too simple):

I'm new to R and am trying to extract the factors of a dataframe using numeric indices (e.g. df[1]) that are input to a function definition instead of the other types of references (e.g. df$out). df[1] is a list(?) whose class is "dataframe". These indexed lists can be printed successfuly but are not agreeable to the plot() and lm() functions shown below as are their df$out

Hi All: I came across the following problem while working with a dataset, and wondered if there could be a solution I sought here. My dataset consists of information on 402 individuals with the followng five variables (age,sex, status = a binary variable with levels "case" or "control", mma, dma). During data check, I found that in the raw data, the data entry

Full_Name: Ben Cooper Version: 1.5.0 OS: linux Submission from: (NULL) (134.174.187.90) The help page for glm.nb (in MASS package) says that it takes "Any other arguments for the glm() function except family" One such argument is start "starting values for the parameters in the linear predictor." However, when called with starting values glm.nb returns: Error in

Dear list members, This is probably a naive question (from a new user), but I'm having problems getting column names to be recognised in loop that is supposed to apply a set of calculations in turn to each column of a dataframe. The dataframe has 33 columns of output from a simulation. The columns each have a text name and I want to apply the same set of calculations to each column in turn.