similar to: adding error bars to lattice plots

Hi all, I'm trying to plot error bars in a lattice plot generated with xyplot. Deepayan Sarkar has provided a very useful solution for simple circumstances (https://stat.ethz.ch/pipermail/r-help/2005-October/081571.html), yet I am having trouble getting it to work when the "groups" setting is enabled in xyplot (i.e. multiple lines). To illustrate this, consider the singer data

Hello, I am attempting to write a script that adds error bars to a barchart. I basing my attempt heavily on the following thread: http://tolstoy.newcastle.edu.au/R/e2/help/06/10/2791.html I can't seem to get around the problem that was discussed in the thread. The following example should illustrate my problem. Sorry about the messy example but I am 1) trying to make it as close as possible

Dear R Users, I am trying to write a wrapper around summarize and xYplot from Hmisc and am having trouble understanding how to pass arguments from the function I am writing to the nested functions. There must be a way, but I have not been able to figure it out. An example is below. Any advice would be greatly appreciated. Thanks, Dan # some example data df=expand.grid(rep=1:4,

Hi, all, I'm trying to modify the code to a log scale for y-axis from the post http://tolstoy.newcastle.edu.au/R/help/06/06/28612.html However, the error bar did not change accordingly. The following is the code I used based on the singer.ucl data. Thanks in advance! prepanel.ci <- function(x, y, ly, uy, subscripts, ...) { y <- as.numeric(y) ly <-

Having solved this problem, I am posting this so that the next time I search for how to do this I will find an answer... Using qqmath(..., groups=num) creates a separate qq distribution for each group (within a panel). Using the 'col' or 'pch' argument does not (usually) work because panel.qqmath sorts the data (but not 'col' or 'pch') before plotting. Sorting

Good afternoon, I would like to ask for help in controlling y-axis limits and labels in lattice doplots. Unfortunately, the problem is somewhat convoluted, please bear with the long explanation. I would like to create a 3x3 lattice of dotplots, say subject ~ count. The plot is conditioned on variables treatment and risk: subject ~ count | treatment + risk. In the experiment, not all subjects

Hi all, I am just learning R and I am trying to work through the book "Applied Longitudinal Data Analysis" by Singer & Willett. I have some code for this book that supposedly works in S-Plus (I don't have S-Plus so I can't verify that) and I am trying to run the examples in R. Most of the examples run, but I have one plot that gives me an error message. I have

RenE J.V. Bertin wrote: > Hello, and (somewhat belated) best wishes for 2005. > > Can one order not to draw outliers in bwplot, or at least exclude them from the vertical axis scaling? If so, how (or what doc do I need to consult)? > The options that have this effect in boxplot() do not appear to have any effect with bwplot (although outline=FALSE in boxplot does *not* change the

Hi, I'm having a bit of trouble with 'scales="free"' in the segplot() function of latticeExtra. Say we need panels for each year, showing only those counties that are represented in each one: ---<--------------------cut here---------------start------------------->--- library(latticeExtra) data(USCancerRates) uscr.w <- subset(USCancerRates, state ==

Hi all, I've read the emails of Dan, Deepayan and Sundar about adding error bars to the lattice plots ( https://stat.ethz.ch/pipermail/r-help/2006-October/114883.html), but I still have the problem when I want to adding error bars to barchart. I tried both the solution of Deepayan and Sundar but without luck. Here is my code (I changed prepanel.ci and panel.ci a little to plot bars

Hi, The functions prepanel.default.bwplot() and lpretty() are not running in Deepayan's barley example concerning vertical bars with the lattice function barchart(). Why, is there a restricted use for the package lattice-Internal? Urs Simmen mailto:usimmen at dtc.ch

Hello, Is there a simple way of stacking/merging two dataframes in R? I want to stack them piece-wise, not simply add one whole dataframe to the bottom of the other. I want to create as follows: x.frame: aX1 bX1 cX1 ... zX1 aX2 bX2 cX2 ... zX2 ... ... ... ... ... aX99 bX99 cX99 ... zX99 y.frame: aY1 bY1 cY1 ... zY1 aY2 bY2 cY2 ... zY2 ... ... ... ... ... aY99 bY99 cY99 ...

Hello all, I would appreciate your thoughts on a seemingly simple problem. I have a database, where each row represent a single record. I want to aggregate this database so I use the aggregate command : D<-read.csv("C:\\Users\\test.csv") attach(D) by1<-factor(Class) by2<-factor(X) W<-aggregate(x=Count,by=list(by1,by2),FUN="sum") The results I

Dear List, I am writing a custom panel function and xyplot method to plot the results of a procrustes analysis from the vegan package. I am having trouble getting the call to panel.arrows to work as I wish when conditioning. The attached file contains the function definitions for the xyplot method and the custom panel and prepanel functions I am using. This example, using data and functions from

Dear all, How can I make an index plot with lattice, that is plotting a vector simply against its particular index in the vector, i.e. something similar to y <- rnorm(10) plot(y) I don't want to specify the x's manually, as this could become cumbersome when having multiple panels. I tried something like library(lattice) mp <- function(x, y, ...) { x <- 1:length(y)

Hi, I am trying to create a dotplot where each panel shows levels vs. responses; the levels are sorted by responses but levels vary from one panel to another. However, I run into problems with controlling the y-limits and y-labels. In particular, suppose I have a data frame rsp <- c(10,2,4,0,2,3) lvl <-

All, I have data across 5 time points that I am graphing via xyplot, along with error bars. For one of the variables I have missing data for two of the time points. The code below is okay but I can't seem to get the lines to connect across the missing time points. Does anyone now how to rectify this? Cheers, David Afshartous library(lattice) ## the data junk = data.frame( Visit =

One of many scripts to produce 4 lattice plots on one page keeps throwing an error. I've tried manipulating the file to eliminate the error, but have not been able to do so. The error is: > source('bicarb.R') Error in source("bicarb.R") : bicarb.R:15:1: unexpected symbol 14: 15: hco33 ^ The 'h' is in column 0 so the caret would be column -1, but it's

First a bit of background: After doing a search for a flexible polar plot function and coming up empty, I have begun writing one myself. Since I am new to writing mid-level graphics routines, this has required some learning about lattice, grid and related things. I am to the point where I have a workable proof of concept, but still need to make some improvements. My goal is to have

Hi, I'm trying to develop an histogram method for a class called "FLQuant" which is used by the package FLCore (http://flr-project.org). FLQuant is an extension to "array". There is an as.data.frame method that coerces flquant into a data.frame suitable for lattice plotting. The problem is that when I coerce the object and plot it after it works but if the method is