similar to: Special characters: plus/minus - a method that works

Hello all, In one of the packages (phylobase) I'm contributing to, we define a class as follows: setClass("phylo4", representation(edge = "matrix", edge.length = "numeric", label = "character", edge.label = "character", order =

Hi. How do I plot the straight line and r? in a scatter plot using a simple file x~y? Sueli Rodrigues Eng. Agr?noma - UNESP Mestranda - USP/ESALQ PPG-Solos e Nutri??o de Plantas Fones (19)93442981 (19)33719762

Kia ora I'm a using lme (from nlme package) with data similar to the Orthodont dataset and am getting positive log-likelihoods (>100). This seems usual and I wondered if someone could offer a possible explanation. I can supply a sample dataset if requested, but I feel almost certain that this question has been asked and answered recently. However, I can find no trace of it in the mail

Hi All, I have a 1000x1000000 matrix. The calculation I would like to do is actually very simple: for each row, calculate the frequency of a given pattern. For example, a toy dataset is as follows. Col1 Col2 Col3 Col4 01 02 02 00 => Freq of ?02? is 0.5 02 02 02 01 => Freq of ?02? is 0.75 00 02 01 01 ? My code is quite simple as the following to find the pattern ?02?.

Hi R people! :-) I am printing a table of percentages (P) and their 95% confidence interval half-widths (CI). I would like to (i) create a character string of P and CI that has the plus/minus character to the left of CI, then (ii) use write.csv to save that file with the P, CI and the special plus/minus character. I poured over the r-help archives and did not find advice on this. That

Hi I have a data.frame with dim = 18638 (rows) 6 (cols) names(dat) [1] "id" "long" "lat" "species" "type" "size" Variable "species" and "type" are factors. Species has 5 levels "BOV" "CAP" "CER" "OVI" "POR" Variable "type" has 11 levels

Hello, Can anyone explain me what is wrong in the following code? and in particular why it is not possible to change the class of an object thanks to the function with(). Does an alternative exist? xxx <- data.frame(x = c("a","b","c","d","e"), y = c("1","2","3","4","5")) str(xxx) with(xxx, {

I'm new to R so forgive me if this seems like a simple question: So I have table where the row titles are string variables. When I plot the data with rows along the x-axis, the data is ordered alphabetically as opposed to the order of the table. How can I preserve the row order of the table in the plot? Thanks in advance. -- View this message in context:

Hi, I have a frame "treat" and want to find matched pairs in the data frame "control". In the matched (combined) data frame there should be two variables (0/1),indicating the "source" of the data (treat or control), so that it is possibe to set a "filter" (extraxt/select data). #Here are the dataframes (my real data frames have many variables) treat <-

Hello, I would like to know what it means, when the hier.part's output has a data frame of a negative independent contribution for variables (?IJ) and how this can be caused. Thank you very much. Yours sincerely M. Heuner

Hello. I want to create a list of vectors but each component of the list has a different length. For example: Example=list() Example=list(Example,c(1,2,3)) Example=list(Example,c(11,12,13,14,15)) If I want the first component of the Example list, I have to write: Example[[1]][[2]]. R responses 1 2 3 The second component: Example[[2]]: 11 12 13 14 15 If I iterate the previous example,

Hi R-help: I'm just an old guy and new to this list... But have been using R for years now. I want to make a map of counties in the US with shaded colors that depend on the level of variable "Y" that I want to map. I have the US county and state fips codes and the Y variable. How do I do this? Please reply to pzs6@cdc.gov Thanks, Phil Smith pzs6@cdc.gov [[alternative HTML

Hi R-Help: I want to produce a map of the US with different colors for selected states. I installed the map package, and then used: library(maps) I can see that by using map( 'state' ) you get the state boundaries, also. How do I fill in different colors for the different states? I see there is a col parameter for map, but can't see how to get it to work! Please reply

Hi R Community: I want to take the difference in two dates: dt2 - dt1. But, I want the answer in months between those 2 dates. Can you advise me? Please respond to: pzs6 at cdc.gov Thank you! Phil Smith Centers for Disease Control and Prevention

I’ve missed it. I did a quick search and the only thread I found is back from 2013. Could you please provide me with a link to the thread? François Fayard Founder & Consultant - Inside Loop Tel: +33 (0)6 01 44 06 93 <tel:+33%206%2001%2044%2006%2093> Web: www.insideloop.io <http://www.insideloop.io/> Twitter: @insideloop_io > On 06 May 2015, at 07:21, David Blaikie <dblaikie

Dear all, I have a 2 by 2 matrix and I would like to do a barplot with it. (so 2 bars with each having 2 stacks.). I would like to have one colors per stack, so 4 different colors total. The problem is that R is only given me 2 colors (the same two for the bottom stack and the same two for the top stack). Any idea how I can do to have 4 colors? (without using ggplot2 preferably) Here is my

I am using a similar dataset to the following: a= c("Fruits", "Adam","errorA", "steve", "errorS", "apples", 17.1,2.22, 3.2,1.1, "oranges", 3.1,2.55, 18.1,3.2 ) a_table=data.matrix(t(matrix(a,nrow=5))) I would like to highlight the smallest value in the Adam and Steve columns and, also plus and minus the errors

Dear R-users, please consider the following minimal example: \documentclass[a4paper,titlepage,onecolumn,12pt]{article} \usepackage[italian]{babel} \usepackage{amssymb} \usepackage[utf8x]{inputenc} \usepackage[pdftex]{graphicx} \begin{document} <<label=test, echo=FALSE, results=tex>>= df.data1 <- cbind.data.frame(A = rnorm(18), B =factor(rep(LETTERS[1:6],

I am using a syntax like coxph(Surv(start, stop, event) ~ X, data) to estimate the effect of X, which may change at each measurement (every 6 months). Is there anyone who knows a way to test the proportional hazard assumption in that case? Thank you in advance Jean-François Boudreau Sherbrooke University [[alternative HTML version deleted]]

Dear collegues, I´ ve worked with near infrared (NIR) spectroscopy to assess chemical, physical, mechanical and anatomical properties of wood. I use "The Unscrambler" software to correlate the matrix of dependent variables (Y) with the matrix of spectral data (X) and I would like to migrate to R. The matrix of spectral variables is very large (2345 columns and n lines, where n =