similar to: Where to declare S4 classes?

Dear Listers, Kurt (subject "CRAN packages maintained by you" sent on 02/07/2015) was mentionning to package maintainers that "with current versions of r-devel, one can get a convenient summary of all undefined globals" and describing how to get a summary conveniently. Now I am using R 3.2.3 but cannot get this by using rcmd check --as-cran mypackage, the

Dear R-Devels, I am writing right now my own package that makes use of 'tempfile' and there within with 'path.package'. When I install it, I get the error: Error in path.package("mypackage") : none of the packages are loaded. Here is the code, I use in my package: ".defaultDBPath" <- function() { db.path <- tempfile(pattern =

Dear Listers, I have just installed R-2.6.0 and the RWinEdt package 1.7-6 under Windows XP. The R-WinEdt menu well appears at launching (the command library(RWinEdt) is in .Rprofile), but WinEdt is NOT started automatically (this was not the case in the earlier versions of R). When WinEdt is started by hand (eg double-click on a RWinEdt alias after R launching), syntax highlighting and

Dear listers, I have written a function to facilitate the drawing of altitude profiles with x (distance), y (altitude) and a z parameter (altitude magnification). profplot<-function(x,y,z=10,...){ op <- par()$mai par(mai=c(0.95625,0.76875,0.76875,0.95625)) plot(x,y*z, type="l",asp=1,las=1,xlab="",ylab="",yaxt="n",...)

Dear listers, Here we have a strange result we can hardly cope with. We want to compare a null mixed model with a mixed model with one independent variable. > lmmedt1<-lme(mediane~1, random=~1|site, na.action=na.omit, data=bdd2) > lmmedt9<-lme(mediane~log(0.0001+transat), random=~1|site, na.action=na.omit, data=bdd2) Using the Akaike Criterion and selMod of the package pgirmess

Dear listers, I have developped a set of functions that I would like to package on a Windows XP plateform for some friends (this would be more simple than to deliver them as a source text file without handy help). I am working under Windows XP. Of course I have gone through the manual "Writing R extension" and try to sort out what a most simple "packaging" for beginner

Hi I have a package which was built using R 1.9.1 and everything worked fine. I recently upgraded to R 2.0.1 and tried to re-install my package - and I got: Error in library(mypackage) : 'mypackage' is not a valid package -- installed < 2.0.0? So I tried rebuilding it using my new version of R: R CMD BUILD --binary mypackage hhc: not found cp: cannot stat `mypackage.chm': No

Dear listers, glmmPQL (package MASS) is given to work by repeated call to lme. In the classical outputs glmmPQL the Variance Structure is given as " fixed weights, Formula: ~invwt". The script shows that the function varFixed() is used, though the place where 'invwt' is defined remains unclear to me. I wonder if there is an easy way to specify another variance

Function/file names are hypothetical. Say I have written myfunction.R, which calls myfunction.c via .C("myfunction", ...). I've compiled successfully myfunction.c via R CMD SHLIB myfunction.c in the terminal. Then, in the R console: dyn.load("myfunction.so") source("myfunction.R") test <- myfunction() # works fine So everything is in order, myfunction works

Dear friends, I am building an R package called *mypackage*. I followed every possible steps (to my understanding) for the same. I got following problem while doing *R CMD check mypackage*. * installing *source* package 'mypackage' ... ** libs cygwin warning: MS-DOS style path detected: C:/PROGRA~1/R/R-213~1.0/etc/i386/Makeconf Preferred POSIX equivalent is:

Hello Is anyone else having problems receiving email from the list? No email from R help today! Thanks Marwan ------------------------------------------------------------------- Marwan Khawaja http://departments.aub.edu.lb/~mk36

pkgA's NAMESPACE has importFrom(graphics, plot) exportClasses("A") exportMethods("plot") R/foo.R has setClass("A") setMethod("plot", "A", function(x, y, ...) {}) During R CMD INSTALL pkgA_1.0.tar.gz we are told ** preparing package for lazy loading Creating a generic function for 'plot' from package

Dear Listers, Apologize to pile up on the 'tz' issue in POSIX objects. I have a 'simple' thing on which I must make up my mind but cannot do it from the existing R-help threads. I am currently working on dog telemetry in China, and download time information from GPS collars. I would like to set up the corresponding POSIXxx variables in R to a given time zone. Eg Pekin

I'm putting together an R package. I would like to show example code in the vignette, where example data files (included in the package) are used to generate an (example) output file. I read about using example data in Hadley Wickham's post ( http://r-pkgs.had.co.nz/data.html), and believe I should keep my example data as raw data, as it must be parsed to generate the output. So, I

Hi, further down from the problem I asked about yesterday I encounter the following problem (please appologize for the lengthy mail - I have not found a brief example making the issue clear): - using R packages making use of namespaces & - S4 classes when using --with-package-versions in the install call: Pkgs install ok and the first pkg 'base' can be loaded in R

Dear R users, I am writing my first R package and it finally past the R CMD check. Before sending it to CRAN, I would like to check a few issues. 1. I created s4 classes and methods in the package but I want only 1 function (foo) to be available to users and documented in the manual that goes with the package. I put foo in 1 file and the rest (internal functions, classes and methods) in a

When I run the following: cd \Rpkgs rcmd install mypackage -l library I get a message that it cannot find quadprog which is a library that mypackage depends on. Error: package 'quadprog' could not be loaded I previously used C:\Program Files\R\rw2011\library as my library for CRAN packages and did not have a problem but now that I use C:\Program Files\R\library this problem

Dear Listers, I have encountered a strange problem using diff() and POSIXt: dts<-c("15/4/2003","15/7/2003","15/10/2003","15/04/2004","15/07/2004","15/10/2004","15/4/2005","15/07/2005","15/10/2005","15/4/2006") dts <- strptime(dts, "%d/%m/%Y") class(dts) [1] "POSIXt"

Dear Listers, I have encountered a strange problem using diff() and POSIXt: dts<-c("15/4/2003","15/7/2003","15/10/2003","15/04/2004","15/07/2004","15/10/2004","15/4/2005","15/07/2005","15/10/2005","15/4/2006") dts <- strptime(dts, "%d/%m/%Y") class(dts) [1] "POSIXt"

Dear All, I have seen a number of e mails on this topic but I have not seen a general solution to date. I have Fortran and C source codes and they have been compiled successfully using: R CMD build mypackage And R CMD install mypackage Without error messages. I then open R and tests out two functions and get: > pgl(0.2,1,2,3,4) Error in