similar to: help with parsing multiple coxph() results

Dear All: I have a question on using coxph for multiple genes: I have written code to loop through all 22283 genes in the Hgu-133A and apply coxph on survival data. However, I don't know how to work with the result for each gene: survtest<-coxph(Surv(pcc.primary.stg.3.cox[,'fup_interval'],pcc.primary.stg.

How can I get the Log - Rank p value to be output? The chi square value can be output, so I was thinking if I can also have the degrees of freedom output I could generate the p value, but can't see how to find df either. > (survtest <- survdiff(Surv(time, cens) ~ group, data = surv,rho=0)) Call: survdiff(formula = Surv(time, cens) ~ group, data = surv, rho = 0) N Observed

Hello R helpers: *My first message didn't pass trough filter so here it's again* I would like to obtain probability of an event for one single patient as a function of time (from survfit.coxph) object, as I want to find what is the probability of an event say at 1 month and what is the probability of an event at 80 months and compare. So I tried the following but it fails miserably. I

Hi Nithya, thank you very much for your support and sorry for the late. Below you can find the output of ?gluster volume info tier2? command and the gluster software stack version: gluster volume info Volume Name: tier2 Type: Distributed-Disperse Volume ID: a28d88c5-3295-4e35-98d4-210b3af9358c Status: Started Snapshot Count: 0 Number of Bricks: 6 x (4 + 2) = 36 Transport-type: tcp Bricks:

Hi All, any news about this issue? Can I ignore this kind of error message or I have to do something to correct it? Thank you in advance and sorry for my insistence. Regards, Mauro > Il giorno 29 dic 2017, alle ore 11:45, Mauro Tridici <mauro.tridici at cmcc.it> ha scritto: > > > Hi Nithya, > > thank you very much for your support and sorry for the late. > Below

I think it is safe to ignore it. The problem exists? due to the minor difference in file time stamps in the backend bricks of the same sub volume (for a given file) and during the course of tar, the timestamp can be served from different bricks causing it to complain . The ctime xlator[1] feature once ready should fix this issue by storing time stamps as xattrs on the bricks. i.e. all bricks

Hi Ravi, thank you very much for your support and explanation. If I understand, the ctime xlator feature is not present in the current gluster package but it will be in the future release, right? Thank you again, Mauro > Il giorno 02 gen 2018, alle ore 12:53, Ravishankar N <ravishankar at redhat.com> ha scritto: > > I think it is safe to ignore it. The problem exists due to the

Hi Mauro, We would require complete log file to debug this issue. Also, could you please provide some more information of the core after attaching to gdb and using command "bt". --- Ashish ----- Original Message ----- From: "Mauro Tridici" <mauro.tridici at cmcc.it> To: "Gluster Users" <gluster-users at gluster.org> Sent: Monday, September 25,

Dear Gluster Users, I implemented a distributed disperse 6x(4+2) gluster (v.3.10.5) volume with the following options: [root at s01 tier2]# gluster volume info Volume Name: tier2 Type: Distributed-Disperse Volume ID: a28d88c5-3295-4e35-98d4-210b3af9358c Status: Started Snapshot Count: 0 Number of Bricks: 6 x (4 + 2) = 36 Transport-type: tcp Bricks: Brick1: s01-stg:/gluster/mnt1/brick Brick2:

Hi, Following are the command to get the debug info for gluster - gdb /usr/local/sbin/glusterfs <core file path> Then on gdb prompt you need to type bt or backtrace (gdb) bt You can also provide the output of "thread apply all bt". (gdb) thread apply all bt Above commands should be executed on client node on which you have mounted the gluster volume and it crashed.

Hi Ashish, thank you for your answer. Do you need complete client log file only or something else in particular? Unfortunately, I never used ?bt? command. Could you please provide me an usage example string? I will provide all logs you need. Thank you again, Mauro > Il giorno 26 set 2017, alle ore 09:30, Ashish Pandey <aspandey at redhat.com> ha scritto: > > Hi Mauro, > >

I hope you'll all forgive me for displaying my severe lack of knowledge on this topic, and I can't really provide much in the way of reproducible code. A colleague of mine has asked if I know how to import an S object into R. The object is stored in a file named 'pre3.f' When I open the file as a text document I get what's printed below. Being one of those young bucks with

Hi Ashish, I?m sorry to disturb you again, but I would like to know if you received the log files correctly. Thank you, Mauro Tridici > Il giorno 26 set 2017, alle ore 10:19, Mauro Tridici <mauro.tridici at cmcc.it> ha scritto: > > > Hi Ashish, > > in attachment you can find the gdb output (with bt and thread outputs) and the complete log file until the crash happened.

Hi, For 3 days uptime serve about 40 client Windows workstation with traffic average 50 Mbps - 80 Mbps (Video streaming) running on FreeBSD system with 16 GB RAM already installed. # uname -smrv FreeBSD 12.1-STABLE FreeBSD 12.1-STABLE r364492 GENERIC amd64 # pkg info samba\* samba410-4.10.17 I got this produce error in /var/log/message, any clue for this problem? Sep 14 10:20:15 BEC-STG-P1

Hi Ashish, in attachment you can find the gdb output (with bt and thread outputs) and the complete log file until the crash happened. Thank you for your support. Mauro Tridici > Il giorno 26 set 2017, alle ore 10:11, Ashish Pandey <aspandey at redhat.com> ha scritto: > > Hi, > > Following are the command to get the debug info for gluster - > gdb

(switched to email. Please respond via emailed reply-to-all, not via the bugzilla web interface). On Thu, 17 Feb 2011 13:20:20 GMT bugzilla-daemon@bugzilla.kernel.org wrote: > https://bugzilla.kernel.org/show_bug.cgi?id=29302 > > Summary: Null pointer dereference with large max_sectors_kb > Product: IO/Storage > Version: 2.5 > Kernel

On 29 June 2012 17:46, Karel Gardas <karel.gardas at centrum.cz> wrote: > Yes and no. Shortly: original GHC/ARM/LLVM port was done by Stephen on > ARMv5/Qemu IIRC. I've later added whole VFP support and ARMv7 support. The > code in GHC is properly #ifdefed, so if there is no VFP available on pre > ARMv6, then it's not used. ie. GHC STG floating points regs are then >

Hi Renato, On 06/25/12 12:13 AM, Renato Golin wrote: > Hi Karel, > > I understand this patch has already been merged (to 3.0), so don't > take my question as stopping the merge to head, I'm just making sure I > got it right... The rest looks correct. > > + CCIfType<[v2f64], CCAssignToReg<[Q4, Q5]>>, > + CCIfType<[f64], CCAssignToReg<[D8, D9,

A new Debian(unstable) machine with Samba 4.5.2 is trying to join an NT4-style Samba domain hosted on a Debian(wheezy) Server with 3.6.6 which can't be changed but has been working for some years now with a couple of windows clients. Joining the domain was quite easy (only surprise was "client ipc signing"), and "wbinfo -u" gives me a list with all domain users. BUT

Hello all! I am currently trying to sort a data frame in a particular way, but I am having some difficulties with this. Specifically I want to sort the below dataset in such a way that there is only one line per ProteinID and if there are multiple GeneID or GeneName entries for a single proteinID, that they be concatenated with a comma separating them. The way I have done it earlier worked fine