Displaying 20 results from an estimated 2000 matches similar to: "Current state of support for BUGS access for Linux users?"
2009 Feb 17
2
How to connect R and WinBUGS/OpenBUGS/LinBUGS in Linux in Feb. 2009
Hi all,
I've managed to get JAGS working on my Ubuntu Hardy Linux with a 32-bit
computer and AMD processors using R 2.8.1. JAGS is great. I've read that
JAGS is the fastest, but that hasn't been my experience. At any rate, I
have more experience with WinBUGS under Windows and would like a version of
that working as well.
It seems like I've read a lot on the subject and tried a
2008 Dec 20
2
Problems installing lme4 on Ubuntu
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While I'm not an R expert, I have used R on Windows XP. Now I've moved
to Ubuntu (Intrepid), and I'm trying to configure R to work with the
Gelman and Hill _Data Analysis Using Regression and
Multilevel/Hierarchical Models_. So far, it's not working.
I start by following the instructions for installing arm and BRugs at
2006 Apr 29
3
Making R talk to Win/OpenBUGS in Linux (again)
I'm back!
I've just learned that, on a fully updated Fedora Core Linux5 sytem,
the working solution to access Winbugs under wine via the R package
"rbugs" no longer works. Here was my last post on this topic (with
the formerly working solution) from January.
http://finzi.psych.upenn.edu/R/Rhelp02a/archive/68497.html
Currently, what happens is that WinBUGS starts up, but just
2009 Jul 07
1
R2WinBUGS under Linux/WINE fails
Hi,
I'm running wine-1.0.1, OpenBUGS 3.0.3, R 2.9.0, and R2WinBUGS on a Redhat
Enterprise Linux machine.
Following various peoples' suggestions...
This works perfectly (yay!): wine Z:/opt/OpenBUGS/winbugs.exe
Within R, however, I get this:
(setup the example from ?bugs, then....)
R> schools.sim <- bugs(data, inits, parameters, model.file, n.chains=3,
2008 Jan 31
1
R2WinBUGS is broken
Dear R-users,
I am trying to use the following code to reproduce results from Prof.
Gelman's book, but have the listed error for R2WinBUGS version (the openbugs
version is good). I am using R-2.6.1 on windows XP, and all the R packages
are most current ones. schools.bug can be found at
http://www.stat.columbia.edu/~gelman/bugsR/runningbugs.html . Can anyone
help me to figure out what's
2010 May 06
1
BRugs dwwinn.exe error
Hi,
I have a strange behaviour of openBUGS and WinBUGS when I start them
from R.
Version:
R: 2.10.1
openBUGS: 3.07
WinBUGS: 1.43
R2WinBUGS: 2.1-16
BRugs: 0.5-3
I have a model and data without initial start values. If I use the stand
alone versions of openBUGS and WinBUGS I don't have any problems and I
get what I want.
If I use function bugs() from R2WinBUGS- resp. BRugs-Library then
2009 Oct 06
2
R, Coda, and OpenBUGS
Hi All,
I am trying to figure out how to use R-Coda with the output from
OpenBugs. I have installed and loaded the packages BRugs and R2WinBUGS.
I have successfully run a simple Bayes model in WinBUGS using R2WinBUGS'
"bugs" and have used "read.bugs" to build the coda object. I can
successfully switch to OpenBugs and run the same model and get the basic
summary
2007 Nov 23
2
R2winBUGS & WinBUGS gui
I am trying to figure out if it is possible to run winBUGS from within
R, using R2winBUGS, without having winBUGS spawn any windows (basically
- 'true' batch - no GUI actions at all). The reason being I have a
machine which I (and several others) ssh/telnet into, and would like to
run winBUGS without having to mount a virtual desktop of any kind.
I've looked through the r2winBUGS
2011 Oct 20
1
Are they fully identical: WinBUGS and OpenBUGS; R2WinBUGS and R2OpenBUGS
Hello ALL!
I am running Linux, Fedora 15 64-bits, and R on it. I need to use
WinBUGS and R2WinBUGS, but as far as I read, WinBUGS is closed project,
to be continued with/as OpenBUGS. Thus, I have found R2OpenBUGS on
OpenBUGS Contributed Code (http://openbugs.info/w/UserContributedCode),
not on CRAN. Author(s) states that it is equivalent for R2WinBUGS. I
tried briefly, and realized few minor
2009 Nov 03
2
R2WinBUGS not working?
This weekend I noticed that my R2WinBUGS connection was no longer working on
my Windows computer at work AND my Ubuntu linux computer at home. As soon
as WinBUGS opens, the message reads Index Out Of Range. I have un-installed
and re-installed R on both computers and the problem remains the same. At
first I thought it was the new version of R, but I was able to overcome the
problem (on Windows
2008 Dec 31
3
WinBUGS posterior samples (via R2WinBUGS)?
Hi all,
I did some analysis using package R2WinBUGS to call WinBUGS. I set the
iterations to 50000 (fairly a large number, I think), but after the program
was done, the effective posterior samples contained only 7 draws. I don't
know why.
By the way, I checked posterior sample size by using bugsobj$n.sims. And,
for my previous practice with WinBUGS/R2WinBUGS, no such strange thing
happend.
2008 Feb 15
1
question about calling winbugs in R
Dear All:
Do you have any experience on calling winbugs in R enviorment? I uploaded R2winbgus, pktools, BRugs, ect. in order to call winbugs. In the end, I try to use bugs(). The error message still displays that bugs() can not find.
Do you have any similar issue? If so, could you give your advice?
Many Thanks!
Xin
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2009 Oct 07
1
Which JAGS interface to use?
Frank (or anyone else), can you offer any comments comparing runjags,
R2jags, rjags ?
I couldn't find any vignettes, nothing except a brief mention on Task Views.
Kevin
On Wed, Oct 7, 2009 at 7:48 AM, Frank E Harrell Jr <f.harrell@vanderbilt.edu
> wrote:
> Have you tried the rjags package which uses the jags system? It is much
> more integrated into R and works quite well.
2008 Jun 10
1
Bayesina Analysis using the BUGS Language
Hi all,
I observed that the 'link' between R and BUGS (winBugs/linBugs) has
totally disappeared. I'm wondering what package can be use to run
bayesian models specified using the BUGS language in R (specifically
under Linux). Is there any other option besides JAGS ?
Thanks
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2008 Jan 20
3
Bugs through R in Mac
Hello,
I recently changed from Win XP to Mac OS X (10.5.1).
Is there a way to run Bugs (in any version) in R (R version 2.6.0
(2007-10-03)) on this platform?
Fredrik
2010 May 17
1
BRugs under Linux?
Hello.
In this post:
http://finzi.psych.upenn.edu/Rhelp10/2010-March/233815.html
Uwe Ligges suggests using BRugs rather than R2WinBUGS under windows. He
also notes that it is not in the main CRAN repository, but it is in
"extras" which is a default repository under windows.
I have OpenBUGS 3.1.0 (the latest that has a native Linux version which
is no longer called linBUGS)
2007 Jul 14
2
HELP FOR BUGS
Hi Sir
I am very new user of R for the research project on multilevel logistic regression.
There is confusion about bugs() function in R and BUGS software. Is there any relation between these two? Is there any comprehensive package for Multilevel Logistic modelling in R?
Please guide in this regard.
Thank You
RAZA
---------------------------------
Boardwalk for
2006 Dec 07
2
Enhances, require() and quality control
Hello!
I am working on a package where Enhances field seems to be a plausible
option. When I add package, say coda, to this field, I get the following
warning with recent R-devel:
----
* checking for working latex ... OK
* using log directory '/home/ggorjan/programs/R/devel/test.Rcheck'
* using R version 2.5.0 Under development (unstable) (2006-12-06 r40129)
* checking for file
2005 May 16
1
A question about bugs.R: functions for running WinBUGs from R
Dear R users,
I've found bugs.R : the functions for running WinBUGs from R that is
writen by Dr. Andrew Gelman who is a professor from Columbia University.
The bugs.R would be very useful for me, and I think many of you know it
as well. I followed the instuctions on Dr. Gelman's web to install all
of documents that bugs.R needs, but when I try to run the school example
the web posted in
2007 Jul 29
1
R2WinBUGS more updates after model did not converge
After running a model for a while and seeing that it did not converge yet, how
can I continue to run, ie not starting anew, the model?
I know if I manually/interactively use winbugs, this is possible anytime, but
how can I do this in r2winbugs, so that my existing sim$sims.array and other
stuff in the object that bugs() returns gets extended?
Thanks Toby