similar to: Syntax Question

Hi all, I am a beginner to R, so you have a right to dislike me. I have loaded up a data matrix (664 * 28) into the R environment and wish to have a pre-written program (MAXCOV-HITMAX) analyse the data. When I run the program, I get: "Error in ncol(hitdat). Argument "hitdat" is missing with no default"; I can't seem to find much info in the manuals, etc. to help me out, so

Hi all, I have a large table mapping thousands of COGs(groups of genes) to pathways. # Ex COG0001 patha pathb pathc COG0002 pathd pathe COG0003 pathe pathf pathg pathh ## I would like to combine this information into a big list such as below COG2PATHWAY<- list (COG0001 = c ("patha ","pathb ","pathc

Has anyone had success building a package on a windows machine? I am trying the following command with no luck (perhaps my flags are incorrect?). At this point I am stuck. Any help greatly appreciated. Niels Waller (BTW - I have no idea why it cannot find sh.exe since I have it is a directory that is specified in a path statement) H:\R\bin>rcmd build --binary --use-zip h:\taxon2 * checking

R colleagues, I am stumped. I would like the inter-tick distances to be the same on the x and y axes but cannot determine how to do so when the lower half of the y axis is not printed. Thanks for any and all suggestions. (btw, setting par(pty="s") does not solve my problem) Niels Waller M<-matrix(c(2,1, -1,3),2,2,byrow=TRUE)

I have written an R function that writes output to an external file using the sink function. I assume that `sink' is not operating system dependent. At the end of the function I have additional code that opens the newly created file using notepad on a Windows system. Obviously, this part of the code will not work on a Mac or Linux box. Since I do not have a machine with Linux or the Mac OS

R users, I recently upgraded (?) to Windows XP from 2000. I am trying to build an R package. I have done this many times on my old system and I am not sure why it is not working in XP. To build the package I call a bat file that specifies all the necessary paths -- but the "build" file (which appears to be a perl script) is looking for a "src" subdirectory in the src

R community, I am having trouble adding Greek symbols to a plot. I want to mix Roman text and Greek -- but they keep fighting! Pseudo code for what I want: [Greek] gamma [subscript]1 = [Roman] Threshold 1 I have conducted a search on the CRAN FAQ list, but no luck. Any and all hints would be GREATLY appreciated. Niels Waller Department of Psychology and Human Development Vanderbilt

Is R behaving correctly in this example? I do not understand why column 2 has any 2s in it (and why column 3 has any 1s) > x<-matrix(0,10,3) > x[seq(1,10,by=2),2:3]<-c(1,2) > x [,1] [,2] [,3] [1,] 0 1 2 [2,] 0 0 0 [3,] 0 2 1 [4,] 0 0 0 [5,] 0 1 2 [6,] 0 0 0 [7,] 0 2 1 [8,] 0 0 0 [9,] 0 1

Dear Friends, Yesterday I posed a question to the list concerning the possibility of doing animation examples in R. Here is an example S-Plus (4.5 for Windows ) that I wrote to illustrate my problem. If I try this in R (comment out the graphsheet and guilocator calls) I don't see my results until after the function has iterated through the 100 trials. I would like to plot each iteration.

I have been reading that there may be a patch floating around to enable krb5 auth in dovecot <1.0, namely 0.99.10.8 (openbsd port). It could be I have something misconfigured, for openbsd supports kerberos and most programs which use the operating system's auth features use kerberos transparently through login(1). If there is a patch, I would be very interested in testing it. -- John

Dear R community, I am running R 2.0.1 on a Windoze XP OS. I recently upgraded from R 1.9x to 2.0.1 and I am currently upgrading a my personal function packages. My other packages compiled without a hitch but I am having a difficult time with my largest package. Can someone please help me with the following error message "Error in parse(file, n, text, prompt) : syntax error on line

I am trying to write my first R package. The file 'Creating R packages' instructs me to create a 'man' subdirectory for the help files (with an Rd extension). However when I look at other libraries I do not find a man subdirectory (I find html dirs). Also I am told to include a keyword from the KEYWORDS.db. However this file is not on my system? Any suggestions? I am working

Dear friends, I am trying to port a collection of S-PLUS teaching functions over to R. Several of my functions use animation. Animation in S-PLUS is not ideal, but can be accomplished with a call to guiLocator (this forces the program to print to the graphsheet rather than wait until the function has completed all calculations). Does anyone know if there is a trick that will enable me to

Hello, I am not only interested in finding out which genes are the most highly up- or down-regulated (which I have done using the linear models and Bayesian statistics in Limma), but I also want to know which genes are consistently highly transcribed (ie. they have a high intensity in the channel of interest eg. Cy5 or Cy3 across the set of experiments). I might have missed a straight forward

Is there anyway to change the color of the text when using writeLines? I would like to write a red error message to the screen. thanks for any leads. Niels Waller -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.- r-help mailing list -- Read http://www.ci.tuwien.ac.at/~hornik/R/R-FAQ.html Send "info", "help", or "[un]subscribe" (in the

The (slow) SOM code can be found on my web page (towards the bottom) http://peabody.vanderbilt.edu/depts/psych_and_hd/faculty/wallern/ On Thu, 1 Mar 2001, John Aitchison wrote: > > Is there an implementation of the SOM ('Self Organizing Map') procedure in > R ? > > I am aware of the implementations of Sammon mapping, multidimensional > scaling and, somewhat

I'm using R 1.6.2 on a Windows 2000 machine. I've plotted the results of an MDS run labeled by a numerical ID, and color coded by a group code: plot(cv.mds.spr$points, type="n", main="Non-Metric Multidimensional Scaling of SprRun CV Watersheds") text(cv.mds.spr$points, labels = as.character(cv.wshed.id.spr), col = codes(cv.wshed.grp), cex=.75) Question is, how do I

I am trying to do a Nonparametric Tukey-type multiple comparison post-hoc test to determine which groups are significantly different. I have read the dialogue on this topic from the R-help, and am still not clear why no statistical packages include this test as an option? Is it not an appropriate test to conduct on non-normally distributed data? Is the only option to calculate it by hand

Sorry for disturbing you, but we have some problems with an installation with multiple (84) T1s from Quest. Now, our Problem is disconnected numbers are reported by sending in- band channel alert message and the B-Channel will have the tri tone and respective message but the line is never "picked up" and stays in ringing when dialling. So disconnected numbers are never detected as

On Wed, Dec 18, 2019 at 4:56 AM Peter Waller <Peter.Waller at arm.com> wrote: > On 17/12/2019 22:25, James Y Knight wrote: > > I think it would probably make the most sense to land this as a single > > merge-commit (from the 2700-commit rewritten history you've created) > > onto llvm-project master, rather than as 2700 individual toplevel > > commits to