Displaying 20 results from an estimated 1000 matches similar to: "mid-p CIs for common odds ratio"
2007 Jun 11
1
epitools and R 2.5
At work after updating to R 2.5 I get an error using epitab from package
epitools, when at home (R 2.4) I get no error. Could someone help me?
Thanks
Pietro Bulian
Servizio di Onco-Ematologia Clinico-Sperimentale
I.R.C.C.S. Centro di Riferimento Oncologico
Via Franco Gallini 2
33081 Aviano (PN) - Italy
phone: +39 0434 659 412
fax: +39 0434 659 409
e-mail: pbulian at cro.it
(at work)
2008 Dec 02
1
Asymmetric CIs
Hi, I was wondering if there was some sort of package or function that calculated asymmetric confidence intervals for small proportions. I thought of both the epicalc and epitools package, but I am hoping to find something where you can just plug in a standard error and point estimate and it will output the upper and lower CI bounds.
Thanks!
Sarah
2005 Oct 18
4
Efficient ways of finding functions and Breslow-Day test for homogeneity of the odds ratio
Dear all,
I have been trying to find a function to calculate the Breslow-Day test for
homogeneity of the odds ratio in R. I know the test can be preformed in SAS
but i was wondering if anyone could help me to perform this in r.
In addition i have the fullrefman file to search for functions in the basic
R packages, does anyone have any suggestions of an efficient way of
searching for
2007 Feb 24
1
Woolf's test, Odds ratio, stratification
Just a general question concerning the woolf test (package vcd), when we have
stratified data (2x2 tables) and when the p.value of the woolf-test is
below 0.05 then we assume that there is a heterogeneity and a common odds
ratio cannot be computed?
Does this mean that we have to try to add more stratification variables
(stratify more) to make the woolf-test p.value insignificant?
Also in the
2001 Mar 21
2
LR-based CIs for GLMs
We are using glm() to models to counts of deaths due to rare causes using a log link and Poisson error distribution, with population as the offset. Approximate confidence intervals for the parameter estimates are easy to calculate using a standard normal deviate, but obviously when the counts of deaths are small (which is why we are using Poisson regression), these intervals are very approximate
2011 Jul 10
1
Odds Ratio for evaluating Diagnostic tests
Hi friends,
I have a doubt reg the application of odds ratio.
When evaluating a diagnostic test, what odds ratio I should apply?
When I use..
*>oddsratio (X)** *
the OR I get is not ad/bc.
Thank you.
Regards,
Dr Manoj Aravind,
PG Resident,
Dept of Community Medicine,
Osmania Medical College,
Hyderabad, India.
[[alternative HTML version deleted]]
2002 Feb 19
1
exact confidence intervals for conditional logistic regression
Dear R folks,
We completed a matched case-control study that was analyzed using
conditional logistic regression. Because of the small sample size we need
to calculate exact confidence intervals. The quick solution is to purchase
LogExact by Cytel. However, we'd like to do this in R. Anyone have
experience with this?
Many thanks,
Tomas
____________________________________
Tomas Aragon, MD,
2006 Feb 17
2
creating 3-way tables for mantelhaen.test
Hi R users
I have serveral binary variables (e.g., X1, X2, X3, X4, X5, X,6, and X7) and
one continuous variable (e.g., Y1).
I combined these variables using data.frame()
mydata <- data.frame(X1,X2,X3,X4,X5,X6,X7,Y1)
after that, I sorted this data.frame
rank.by.Y1<-order(mydata[,8])
sorted.mydata<-mydata[rank.by.Y1,]
after that, I replaced Y1's values with values ranging from 1
2009 Jun 17
4
trouble to start dovecot when ldap enabled
Hello
I need help
on a fedora release 11 (Leonidas) when I start the dovecot process I get
an error :
Jun 17 10:15:24 aragon dovecot: Dovecot v1.2.rc3 starting up (core dumps
disabled)
Jun 17 10:15:24 aragon dovecot: Fatal: auth(default): Support not
compiled in for passdb driver 'ldap'
Jun 17 10:15:24 aragon dovecot: Fatal: Auth process died too early -
shutting down
I installed
2006 Nov 10
3
Confidence interval for relative risk
The concrete problem is that I am refereeing
a paper where a confidence interval is
presented for the risk ratio and I do not find
it credible. I show below my attempts to
do this in R. The example is slightly changed
from the authors'.
I can obtain a confidence interval for
the odds ratio from fisher.test of
course
=== fisher.test example ===
> outcome <- matrix(c(500, 0, 500, 8),
2005 Jul 08
1
exact conditional mantelhaen.test estimate is 0 ?!
Dear listers,
I am trying to compute the exact conditional test given strata margins
of a 2 by 2 by K array using the mantelhaen.test function to get a
common odds ratio estimate.
The estimate for the test on the following data is 0, which in my
opinion dosen't make any sense.
x <- array(c(53, 6098, 1006, 4521, 63, 8070, 1163, 6137), dim=c(2,2,2))
x
, , 1
[,1] [,2]
[1,] 53 1006
2003 Oct 27
0
AW: Query: IRR Confidence Intervals
Hi Cristian,
I don't know about a R routine for exact CIs, but I found a function called
"ageadjust" using a gamma distribution approximation some time ago -take a
look at http://medepi.org/epitools/rfunctions/index.html.
That Webpage seems a bit outdated now, but the calculations given in the
ageadjust functions should still work, I think.
Maybe this helps;
regards
Heinrich.
2005 Apr 26
1
mantelhaen.test for more than two groups?
Dear All,
I'd like to perform the generalized Cochran-Mantel-Haenszel-Test (as
described in Agresti (1990), Categorical Data Analysis) for my nominal data.
My problem is that I have more than two groups. In fact I think I'd need
an 5-dimensional array for the response variable, the control variable
and three group variables.
Could you please tell me if this is possible in R - and if
2001 Mar 06
0
Continued utmp probs with sshlogin.c
Hi all,
I've hacked in some better logging for what's going on with my logins and
utmp/wtmp. Everything seems OK except for u.ut_host.
In my case, the actual variable host for this test case is
aragon.cheshirelaw.com. This is fine (as my logs show):
Mar 5 21:22:47 frodo sshd[10274]: Actual: 983852567 /dev/ttyp0
aragon.cheshirelaw.com
However, check out what u.ut_host is logged as:
2019 Dec 13
0
BUG: panic when using fs:posix as dict for acl_shared_dict
It's not very high priority I'm afraid. Did you try using sqlite instead?
Aki
> On 13/12/2019 17:40 Aragon Gouveia <aragon at phat.za.net> wrote:
>
>
> Hi Aki,
>
> I'm not sure if this bug was worked on?? Sadly I ran into it too
> recently, on version 2.3.4.1.
>
>
> Regards,
>
> Aragon
>
>
>
> On 2018/02/07 13:23, Aki
2005 Apr 07
2
about mantelhaen.test (PR#7779)
Full_Name: Chien-yu Peng
Version: 2.0.1
OS: Windows XP Professional
Submission from: (NULL) (140.109.72.181)
Dear all:
Although I don't know you, I am thankful for your help.
When I use the function mantelhaen.test for R x C x K (R, C > 2) table,
the output is not the same as SAS's. I don't know that the result consist with
one of SAS's. But it works correctly for 2
2013 Apr 24
2
Regression on stratified count data
Hi all:
For stratified count data,how to perform regression analysis?
My data:
age case oc count
1 1 1 21
1 1 2 26
1 2 1 17
1 2 2 59
2 1 1 18
2 1 2 88
2 2 1 7
2 2 2 95
age:
1:<40y
2:>40y
case:
1:patient
2:health
oc:
1:use drug
2:not use drug
My purpose:
Anaysis whether case and
2008 Jul 30
1
odds ratios in multiway tables (stratified)
Hi,
does anyone know of a function to calculate odds ratios in multiway
tables (stratified) (+ the other usual statistics involved)
i mean:
say we have a table r*c*d,
For every d (depth) we have a r*c table,
and in this table the odds ratio's are calculated for every 2*2 subtable
in it.
logically this function would look like):
ORs(multiwaytable)
or
ORs(data$var1r,data$var2c,data$var3d)
2013 May 07
3
Announce: cis-puppet 0.2.0 is now available
Overview
========
This module implements the Center for Internet Security (CIS) Security Configuration Benchmark for Red Hat Enterprise Linux 6 v.1.1.0 (avilable at http://benchmarks.cisecurity.org). Each scored control has been implemented as a class or a custom fact.
Installation
============
Please either:
- Clone git repo from https://github.com/arildjensen/cis-puppet
- Run "puppet
2012 May 04
0
oddsratio and some basic help on epitools
Here is a working snippet.
library(epitools)
mat <- matrix(c(10,15,60,25,98, 12,10,70,28,14, 9,11,68,10,12
,8,13,20,11,58) ,ncol=2)
colnames(mat) <- c("treatmentA","treatmentB")
row.names(mat) <- paste("Cond",rep(1:10,1))
dimnames(mat) <- list("Condition" = row.names(mat), "instrument" =
colnames(mat))
> mat
instrument