similar to: Warning from Rcmd check - data could not find data set

Hola! I got past the problems I asked about two days ago, thanks. No I am updating CRAN package asypow (the daily package check on CRAN gave warnings due to .Rd problems, fixed). Now it PASSED Rcmd check (WindowsXP home edition, rw2000dev, on a new toshiba laptop, if that matters.) but then Rcmd build --binary gives problems: . . . preparing package asypow for lazy loading Error in

Hola! I am doing some minimal changes on the package SenSrivastava to make it fit for R2.0.0 (This package passed Rcmd check on earlier versions of R, and are passing the CRAN daily checks!) I am using rw2000dev from CRAN. Now i get (running in an Xemacs shell): installing R.css in C:/R/rw2000dev/src/gnuwin32/SenSrivastava.Rcheck ---------- Making package SenSrivastava ------------ adding

I am trying to install a local package and get this unexpected error: ---------- Making package UMSA ------------ adding build stamp to DESCRIPTION installing R files installing data files installing man source files installing indices Error: couldn't find function "na.omit" Execution halted na.omit of course is in package stats, and that is listed in the Depends field in

Hola! I am using Rcmd build --binary ... on a windows XP system, and am encountering a strange problem. Rcmd claims there are syntax errors in one of mine .Rd files ******* Syntax error: mismatched or missing brackets in I take "brackets" to mean [], and I have none of them in the file, and don't think they are needed. Rcmd prints out the offending file, and in the printout I

Hola! I ask here since I learnt from this list that the LaTeX package listings should be good for typesetting R code. I encountered one problem: \begin{lstlisting} X %*% V \end{lstlisting} in the output the * in %*% disappears! same with %/%, etc, the / disappears. Any ideas? Kjetil -- Kjetil Halvorsen. Peace is the most effective weapon of mass construction. --

I just discovered that when the VGAM package (not on CRAN) is loaded, glm() doesn't work. This is because VGAM defines a family function() which gets found by glm() in place of the family function from stats. Then VGAM:::family returns an object which doesn't have a $family component, (it has a component $vfamily). I thought namespaces should protect us from this happening? Kjetil --

Suppose I have x<-data.frame(v1=1:4, v2=c(2,4,NA,7), v3=rep(1,4), v4=LETTERS[1:4],v5=rep('Z',4)) or a much larger frame, and I wish to test for and remove the constant numeric columns. I made: is.constant<-function(x){identical(min(x),max(x))} and apply(x,2,is.constant) # Works for numerics x[,-which(apply(x,2,is.constant))] I'd really like to be able to

With rw2010dev I get a strange protect(): protection stack overflow error with a small data frame which otherwise is usable: If anybody wants to have a look I can provide an RData file with the problematic data frame. Doesn't seem to be necessary, the following simulated example generates the error: > testmat <- matrix(1:80, 20,4) > dim(testmat) [1] 20 4 > str(testmat) int

I encountered something strange with read.spss (package foreign, version 0.7 with R2.0.0 and version 0.8 with R2.0.1 beta, windows XP) I made a test file test.sav with SPSS version 11.5.1 containing only one numeric variable, with a value label for one value not occuring in the file. According to ?read.spss this should result in a factor, but it results in all NA. Using the argument

I get the following > library(foreign) Error in namespaceExport(ns, exports) : undefined exports: write.foreign Error in library(foreign) : package/namespace load failed for 'foreign' with rw2000dev as of (2004-09-17 Kjetil -- Kjetil Halvorsen. Peace is the most effective weapon of mass construction. -- Mahdi Elmandjra

Hola! I am writing a package with some large data files, so it would be good to use the feature of zipping data. However, I use .R files to read in the data from one (sometimes more) files, so Rcmd build --zip-data gives a package which does'nt work. How should I do it, is it better ti zip each data file individually and use the functions to read from zipped files, or are there some other

Hello! I was reading R-intro and I have some suggestions: R-intro.html#A-sample-session rm(fm, fm1, lrf, x, dummy) suggestion rm(fm, fm1, lrf, x, y, w, dummy) The next section will look at data from the classical experiment of Michaelson and Morley to measure the speed of light. file.show("morley.tab") mm <- read.table("morley.tab") suggestion mm <- data(morley)

Dear List, We are planning a genotyping study to be analyzed using false discovery rates (FDRs) (See Storey and Tibshirani PNAS 2003; 100:9440-5). I am interested in learning if there is any consensus as to how many features (ie. how many P values) need to be studied before reasonably reliable FDRs can be derived. Does anyone know of a citation where this is discussed? Bill Dupont William D.

I found the need of converting a matrix into a list of its columns (for use with do.call), and was surprised there was no method as.list.matrix, it could easily be a part of as.list default I wrote my.as.list.matrix <- function(mat) { if(!is.matrix(mat))stop("Argument must be a matrix") n <- NCOL(mat) res <- vector(mode="list", length=n)

On trying with very smll test packages to try drilling down to som problems earlier reported in this list, I detected the following: R CMD check on a package with an R subdirectory empty, reports: * checking R files for syntax errors ... ERROR Syntax error in file On removing the empty subdirectory, the error disappears. Kjetil -- Kjetil Halvorsen. Peace is the most effective weapon of

Hi there, Is there an implementation of the Gaveh Stehfest algorithm in R somewhere ? Or some other inversion ? Thanks, Tolga

Have I been sleeping in class? rw1071 from CRAN, windows XP incidencia is made by a call to tapply > class(incidencia) [1] "array" > incidencia <- unclass(incidencia) > class(incidencia) [1] "array" Kjetil Halvorsen

Dear R-users, I have an outcome variable and I'm unsure about how to treat it. Any advice? I have spending data for each county in the state of California (N=58). Each county has been allocated money to spend on any one of the following four categories: A, B, C, and D. Each county may spend the money in any way they see fit. This also means that the county need not spend all the money that

This is rw2000 on windowsXP jpeg("test.jpeg", bg="orangered") plot(1:10, 1:10, col="green") dev.off() ------ jpeg("test.jpeg", bg="blue") plot(1:10, 1:10, col="red") dev.off() ------- jpeg("test.jpeg", bg="green") plot(1:10, 1:10, col="red") dev.off() --- jpeg("test.jpeg",

Hi people, Does anybody know some Density-Based Method for clustering implemented in R? Thanks, Fernando Prass _______________________________________________________