similar to: Aspect ratio and limits

Hi all, Does anyone know of a fairly easy way to "stretch" a heatmap vertically? I've got 42 arrays and would like to be able to see as many significant genes as possible (right now I can only get 50 genes with it still being readable). In some comparisons there are several hundred significant genes. I've fiddled with the "asp" argument, but that doesn't

Hi, I noticed the following problem with xy.coords() in R 2.2.1-patched (version info at the foot of this email) and R 2.3.0 unstable (subversion no: r37123): > xy.coords(x = matrix(1:20, ncol = 2)) Error in xy.coords(x = matrix(1:20, ncol = 2)) : argument "y" is missing, with no default > xy.coords(x = matrix(1:20, ncol = 2), y = NULL) $x [1] 1 2 3 4 5 6 7 8 9

Hi, I am gradually moving from the classical R plot functions to the library Lattice I have some questions about contourplot () and its arguments: 1/ I am working on geographical coordinates which makes necessary that the X (longitude) and Y (latitude) units be represented with the same distance on screen. This was obtained in the classical R plots with plot.default(x,y, asp=1,...) and then

Hi everyone I want a square scatterplot with abline(0,1) going exactly through the SW and NE corners. By "square" I mean that the plotting region is exactly square, and that the axis limits are identical. x <- 1:20 y <- x+rep(c(-1,1),10) lims <- range(c(x,y)) None of the following do this: plot(x,y) ; abline(0,1) #not square plot(x,y,asp=1);abline(0,1) #diagonal

Please, could someone help me figure out what seems to be a very simple problem (and is still taking me hours...). I want to draw a simple scatterplot but with 'equal' axes, i.e. I want both axes to go from -3 to 3. Values for x lie between -2 and 0.5, values for y between -2.2 and 3. I have tried 'usr' and 'eqscplot' and a few other options, but it doesn't give me the

Hi, I just encountered what I thought was strange behavior in MDS. However, it turned out that the mistake was mine. The lesson learned from my mistake is that one should plot on a square pane when plotting results of an MDS. Not doing so can be very misleading. Follow the example of an equilateral triangle below to see what I mean. I hope this helps others to avoid this kind of headache.

What is plot.new? and how can i get it to work so i can load other data? > library(splancs) > area = 6*4 > lambda = 1.5 > N = rpois(1,lambda*area) > u = runif(N,-2,4) > v = runif(N,0,4) > plot(u,v,asp=1) > h = chull(u,v) > h = c(h,h[1]) > plot(u[h],v[h],"1",asp=1) Error in plot.xy(xy, type, ...) : invalid plot type '1' >

Hi, I need to produce an ordinary scatter plot and it is vital that the aspect ratio equals 1. I set the axis as: plot(x, y, type="n", asp=1, ,ylim=c(-80,70),xlim=c(0,100)). The problem is that I get some 'additional' blank plot area (basically, the lower bound of xlim becomes quite negative). The xlim is not the range of the x-data, but I need the 0 there for further

I have a pdf file that I would like to parse into R: http://www.williams.edu/Registrar/geninfo/faculty.pdf For now, I open the file in Acrobat by hand, then save it "as text" and then use readLines(). That works fine but a) I am concerned that some information may be lost and b) I may be doing this a lot, so I would rather have R grab the information from the pdf file directly. So: is

I almost always supply my own aspect ratio when plotting using lattice. When I plot these to pdf, I would like to specify pdf dimensions that will result in minimal margins around the plot. In my application, resorting to a pdf cropper after plotting is not an option - I must do it in R. The problem is that I cannot determine the correct aspect ratio for the overall plot (accounting

R version 2.11.1 on WinXP How do I get 3 scatterplots with marginal boxplots (from the car package) onto a single plot? I have a data frame called bank > dim(bank) [1] 46 5 head(bank) x1 x2 x3 x4 pop 1 -0.45 -0.41 1.09 0.45 0 2 -0.56 -0.31 1.51 0.16 0 3 0.06 0.02 1.01 0.40 0 4 -0.07 -0.09 1.45 0.26 0 5 -0.10 -0.09 1.56 0.67 0 6 -0.14 -0.07 0.71 0.28 0

To constraint the movement to a specific area, I added the following lines in dragdrop.js This will allow you to specify: area: [2,3,100,120] to draw a rectangular area where movement is allowed... might have very strange side effects, just needed a quick/dirty hack. Plus I installed script.aculo.us just 10 minutes ago :) Don''t flame pls. Manuele line:202 (please note the ","

Dear list, I read the SOM package manual but I don't understand how to perform (for example) 1) the SOM analysis on Iris data 2) with a visualization similar to that of figure 7 in http://www.cis.hut.fi/projects/somtoolbox/package/papers/techrep.pdf Any suggestion? Thanks in advance, Gianandrea -- View this message in context:

Hi: (Tried to find a bug report about this issue, but was unable to find it, let me know if this is a known issue) I have been working on an interface to highlight xyplot panels on mouse overs in JavaGD but I have stumbled with what seems to be a bug in trellis.focus. I am using R 2.8 with lattice 0.17-15 *** To replicate the bug: 1.- display an xyplot. For example, from the xyplot help page:

set.seed(1) x <- rnorm(n = 1000, mean = 0, sd = 1) plot(x = x, asp = 2000) Could someone please explain what the 'asp' parameter is doing?

Hello, using Sweave, is there any option to preserve the original aspect ratio of plots generated from R code? Consider this Sweave chunk: <<test,echo=F,fig=T,width=2,height=2>>= x <- 1:10 y <- sin(x) par(mar=c(4,4,0,4)) plot(x,y, xlab="x label", ylab="y label" ) @ In Latex, I want to produce a plot of width 2 but don't care about the

Hello there, I have a fairly simple request (I hope!) I have produced a filled contour plot like this: library(grDevices) library(gplots) library(plotrix) filled.contour(contour, axes=F, frame.plot=TRUE, color=terrain.colors, ylab= "Length Along Flume (m)", key.title = title(main="Velocity\n(m/s)"), key.axes = axis(4, seq(0, 0.6, by = 0.1)), asp=2, plot.axes = {

Is there anything R can do that Splus can't? I know about the differences in the language but what about statistical functionality. Are there models you can build or graphs you can plot in R that you can't in Splus? My impression is that in this respect R is strictly a subset. -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.- r-help mailing list -- Read

Hi, I have two catagorical vectors like this; x = c(1, 2, 4, 2, 1) y = c(2, 4, 2 ,4, 1) I want to set up a barplot with the catagories 1-4 horizontally and number of occurances vertically for each vector x,y. I've tried boxplot(table(x,y), beside=T) and boxplot(c(x,y), beside=T) among others, but can't get it to work...Any ideas? I'd apppreciate any help

Hi, despite the warnings on the website ;-) I played with the current CVS source of theora on Windows 2000 w/ Microsoft Visual C++. The codec and the "experimental" example programs compiled fine. I also encoded a 33 MB MPEG2 (?) video (3 minute trailer) to a 14 MB .OGG using "mplayer -vo yuv4mpeg -ao pcm" and the "encoderwin" sample program, and play it with the