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Hello: I want to use values from the output of linear models done using permuted data to construct a random distribution. The problem I am having is the extraction of a value, say the p-value or the regression coefficient, from the summary of a linear model. When summarizing a linear model I get this: Call: lm(formula = fitness ~ mm) Residuals: Min 1Q Median 3Q Max

Dear R-users: I am doing multiple regressions using the "lm" function and would like to force the intercept to be equal to a specific value (such as 4.3). I was able to find out how to force it through the origin but this does not work for other values. I am also interested in forcing the regression parameters obtained from one regression in another regression with a subset of the

Hello, I am basically familiar with R and am trying to import a module that someone else has written. I know that it must go into the R library but even after I place the file there R doesn't recognize it. The module is maanova, available from the Churchill lab group for analysis of microarray data, if anyone is familiar with it. Any ideas/help? Thanks, Heather --

Dear R-users: I am using the package MAANOVA to analyze microarray data and have encountered problems when trying to plot data. I have tried emailing a MAANOVA discussion group, as well as the author of the package, and have not yet received a response so I am hoping that someone on this listserv can be of assistance. There are several functions in MAANOVA (riplot, resiplot) which call the

I have 5 (A,B,C,D,E) columns in my dataframe. I want to replace all "x" with "y" and all "a" with "b" within these 5 columns. Can I do it in one step? Thanks [[alternative HTML version deleted]]

Hello list, I have two vectors x and x2: x=runif(10) x2=runif(10) and one vectors with their names : my.names=c("x","x2") I would like to cbind these two vectors using their names contained in the vector my.names. I can create a string with comma ncomma=paste(my.names,collapse=",") and now, I just need a function to transform this string into a adequate

We had been using R1.2.3 "print tip lowess function" as described by Terry Speed's group to normalize microarray data and up until this week the commands we were using were working fine. First, we load our data using arrayname<-read.table("filename", header=T) and then check that the table is OK. We format the data list using setup1<-init.data() and usually get a

This bug is not quite fixed - the example from my original report now = works using R-2.2.1, but plot(Uniform, 6) does not. The bug is due to if (show[6]) { ymx <- max(cook, na.rm =3D TRUE) * 1.025 g <- hatval/(1 - hatval) # Potential division by zero here # plot(g, cook, xlim =3D c(0, max(g)), ylim =3D c(0, ymx),=20 main =3D main, xlab =3D

We's like to invite all of you to attend the first annual KVM Forum 2007. Please click here http://www.qumranet.com/KVMForum2007.php to be taken to the event site where you can learn more about the KVM Forum 2007 and register online. Hosted by the KVM Developer Community, the purpose of the forum is to bring together developers, testers and other technical individuals from within the community

We's like to invite all of you to attend the first annual KVM Forum 2007. Please click here http://www.qumranet.com/KVMForum2007.php to be taken to the event site where you can learn more about the KVM Forum 2007 and register online. Hosted by the KVM Developer Community, the purpose of the forum is to bring together developers, testers and other technical individuals from within the community

Hello, suppose I have a list with matrices: a=list(x1=matrix(rnorm(10),5,2),x2=matrix(rnorm(10),5,2),x3=matrix(rnorm(10),5,2)) I want to compute for all combination of xi and xj (x1,x2 x1,x3 and x2,x3) a value. This value is given for the pair x1,x2 by trace(x1%*%t(x1)%*%x2%*%t(x2)) / trace(x1%*%t(x1))*trace(x2%*%t(x2)) I know that product matrices t(xi)%*%xi can be obtained by:

On 19/01/2019 08:01, Aki Tuomi wrote: > >> On 19 January 2019 at 02:07 Tim Dickson via dovecot < >> dovecot at dovecot.org <mailto:dovecot at dovecot.org>> wrote: >> >> >> i recently upgraded a server from dovecot 2.1 to 2.3 >> unfortunately sieve does not appear to be working. The user scripts have >> not changed, and neither has the

Hello, I have a question that is not directly related to R ... but I try to do it in R ;-) : I would like to generate a matrix Q satisfying (for a given Z, X and W) the two following conditions: t(Q)%*%Q=Z (1) XQ=W (2) where: Q is m rows and r columns X is p rows and m columns D is p rows and r columns C is r rows and r columns with m>p,r e.g: m=6, p=2 r=3

Dear R-users, I have a basic question about how to determine the antilog of a variable. Say I have some number, x, which is a factor of 2 such that x = 2^y. I want to figure out what y is, i.e. I am looking for the antilog base 2 of x. I have found log2 in the Reference Manual. But I am struggling how to get the antilog of that. Any help will be appreciated! > version platform

Hi, As I'm pretty new to R I hope this question isn't too basic. I am currently looping through my dataset and for each iteration am producing three separate plots. When I output these plots to the screen they are nicely grouped as three plots per page, however, when I try to send it to a PostScript file I get one page for each plot. I have adjusted my postscript options so that my

Hi, I am running an analysis with an ordinal outcome and I need to run a test of the parallel regression assumption to determine if ordinal logistic regression is appropriate. I cannot find a function to conduct such a test. >From searching various message boards I have seen a few useRs ask this same question without a definitive answer - and I came across a thread that indicated there is no

i recently upgraded a server from dovecot 2.1 to 2.3 unfortunately sieve does not appear to be working. The user scripts have not changed, and neither has the dovecont config. using managesieve allows me to create new sieve files and setting one as default updates the link in ~/ to point to the correct file, but the .dovecot.svbin file is not changed (unless i run sievec

I am trying to use the angle option in polygon to create polygons filled with horizontal and vertical lines. The polygons I am crating are irregular and it the angle function appears to set the angle of the shading perpendicular to the polygon sides rather than perpendicular to the axes. Is there any way to set the angle relative to the axes rather than relative to the polygon sides?

I've just developed edtdbg, a small package that integrates R's debug() with one's text editor. Excerpt from the README file: Goal The debug() function in R is primitive. My goal was to make it more usable by integrating it with one's text editor. Hence I wrote the package here, edtdbg. Its features include: * As one steps from line to line of code

Thanks for the question. Here is a sample of the code for my plot: Top = c(34, 39, 42, 45, 46, 41, 41, 40, 43, 38, 33, 33) Bottom = c(24, 29, 32, 36, 32, 34, 32,41, 40, 39, 29, 24) plot(1,1, col = "white", xlim = c(1.3,11.7), ylim = c(0,80), axis = FALSE, xaxt = "n") axis(1, at = c(1:12)) polygon(c(c(1:12),c(12:1)), c(top, bottom), col =