similar to: Package Documentation, cryptic

On a CentOS 7 machine, I am at a loss with respect to an inability to run a full R CMD check as anything involving tex files ends in tears. We followed the README at CRAN and installed a large number of tex-live packages on this machine. But when a manual is created, we end up with what follows below. Here, I chopped some of the error messages, the key seems to be 'Insufficient extension

On 05/29/2018 04:53 PM, Dirk Eddelbuettel wrote: > I noticed it with a local, not-public package -- but it appears to apply with > any source package. I replicated with pkgKitten straight off CRAN and after > checking that it has a six page manual there. I'm having trouble reproducing this one. In my fresh CentOS 7 VM, I can pull the pkgKitten source down, and run R CMD Rd2pdf

Tom, On 30 May 2018 at 11:34, Tom Callaway wrote: | On 05/29/2018 04:53 PM, Dirk Eddelbuettel wrote: | > I noticed it with a local, not-public package -- but it appears to apply with | > any source package. I replicated with pkgKitten straight off CRAN and after | > checking that it has a six page manual there. | | I'm having trouble reproducing this one. In my fresh CentOS 7 VM, I

Hi, The following command: R CMD Rd2pdf --no-preview --output=./tmp.pdf --title=test genefu-package.Rd run against this file: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/genefu/man/genefu-package.Rd (username: readonly; password: readonly) produces a very verbose error (see below) with R version 2.15.0 alpha (2012-03-07 r58622). The .Rd file has these lines in it: Version: \tab

Hello, can anyone explain the following error I get when trying to use the CHECK command to check a new version of my pakcage under 1.4.0? ****** ./R CMD check ~/GLMMGibbs.0.5.1/GLMMGibbs * checking for working latex ... OK * using log directory `/homef/jonm/R-1.4.0/bin/GLMMGibbs.Rcheck' ... <Installs library, documentation, and then performs various tests, including the example,

Hi, Sorry to bother, but I checked around and did not succed creating a bundle from six existing packages (which are checkable, installable, etc. individually). I carefully followed the procedure given in ch. 1.1.5 Package bundles. However, I am getting hoffmann at fluke:~/R/Sources >R CMD check cwhmisc * checking for working latex ... OK * using log directory

Hi all I am trying to build an R package, which I have successfully done many times before, but have an error I cannot trace. I hope someone can help me. Here's is some edited output (full output below if it is useful): pdunn2 at PDunnUbuntu:~/DSdata$ R CMD build GLMsData * checking for file 'GLMsData/DESCRIPTION' ... OK * preparing 'GLMsData': * checking DESCRIPTION

After configure, make and make check on a linux Suse 7.3 box, I run make dvi and make info with no problems but get a lot of garbage to my screen during make pdf. Is this normal? Is there a bug in this part of the installation? This is part of what I get on the screen: humboldt:/usr/local/R-patched # make pdf make[1]: Entering directory `/usr/local/R-patched/doc' make[2]: Entering

Hi, has anyonne experienced problems between the LaTeX beamer class and Sweave? The following code does not work properly: ################################# \documentclass{beamer} \usepackage[latin1]{inputenc} \usepackage[T1]{fontenc} \usepackage{ngerman} \begin{document} \frame{ \frametitle{test} test <<>>= 1+1 @ } \end{document} ################################# Below is the

SunOS fluke 5.8 Generic_108528-07 sun4u sparc SUNW,Ultra-Enterprise R-1.4.0 Running from the command line R CMD check chlib results in the log file 00check.log: * using log directory `/home/woodstock/hoffmann/R/Sources/chlib.Rcheck' * checking for file `chlib/DESCRIPTION' ... OK * checking package directory ... OK * checking for sufficient/correct file permissions ... WARNING *

Recently, I upgraded MiKTeX to the latest versions, and since then there are problems when I try to build R and/or R packages. I tried to build R 1.9.0 beta and R 1.8.1 patched I am running Windows XP Pro, SP 1 MikTeX version is This is e-TeX, Version 3.141592-2.1 (MiKTeX 2.4) (preloaded format=latex 2004.3.27) fpTeX version is This is e-TeXk, Version 3.141592-2.1 (Web2c 7.5.2) (format=latex

SunOS fluke 5.8 Generic_108528-07 sun4u sparc SUNW,Ultra-Enterprise R-1.4.0 Running from the command line R CMD check chlib results in the log file 00check.log: * using log directory `/home/woodstock/hoffmann/R/Sources/chlib.Rcheck' * checking for file `chlib/DESCRIPTION' ... OK * checking package directory ... OK * checking for sufficient/correct file permissions ... WARNING *

Hi, All: I encountered problems running "pdflatex wrapper.tex", as suggested on "www.r-project.org" -> Newsletter -> (near the bottom of the page). After 220 lines of seemingly successful processing, I got an error copied below. I hit <enter> a few times, and the "pdflatex" finished, apparently successfully. Comments? Thanks,

Hi, This is a follow-up to the problem reported here: https://stat.ethz.ch/pipermail/r-devel/2010-September/058460.html After I updated R-2.12 to 2010-09-13 r52905 on the Bioc build system, some of the packages that have a Makefile in <pkg>/inst/doc still don't build on Windows. For example, 'R\bin\R.exe CMD build adSplit' gives: * checking for file

I've been having problems building vignettes in bioconductor packages with R-devel. Turns out that Rdevel/share/texmf/hyperref.cfg wants Blue and Red predefined, when only blue and red are defined (as of rsync Rdevel, Sept 10th). This is on a Debian unstable system (Sept 9th version). Might not apply to all other tetex systems. Seems to have bitten the bioconductor build system, though.

>>>>> G?bor Cs?rdi <csardi.gabor at gmail.com> >>>>> on Thu, 8 Jan 2015 17:18:27 -0500 writes: > Dear all, > I am getting an R CMD check warning about the PDF manual. I am having a > hard time finding out what is wrong, here is the log of the Rd2pdf call. > The full check (and other) log is at >

On 4/16/2009 10:29 AM, ?????? n/a wrote: > I want write article by russian language using Sweave. For cyrillic text > LaTeX use T2A encoding > > \usepackage[T2A]{fontenc} > > But in Sweave.sty we find: > > \RequirePackage[T1]{fontenc} > > It is source of critical problem. > > For example Rnw file > > $ cat estimation.Rnw > >

Dear all, I am getting an R CMD check warning about the PDF manual. I am having a hard time finding out what is wrong, here is the log of the Rd2pdf call. The full check (and other) log is at https://api.travis-ci.org/jobs/46373922/log.txt?deansi=true if anybody is interested, and the package itself is here: https://github.com/metacran/r-builder/tree/bintex/rbuildertest Thanks, Best, Gabor

I want write article by russian language using Sweave. For cyrillic text LaTeX use T2A encoding \usepackage[T2A]{fontenc} But in Sweave.sty we find: \RequirePackage[T1]{fontenc} It is source of critical problem. For example Rnw file $ cat estimation.Rnw \documentclass[A4paper]{article} \usepackage[T2A]{fontenc} \usepackage[utf8]{inputenc} \usepackage[russian,english]{babel}

Dear R-users, I want to give a try to Sweave and Latex but I am having some problems compiling my .Rnw files within Kile. I have followed the recommendations given in http://tolstoy.newcastle.edu.au/R/e5/help/08/10/4277, but they do not seem to address my particular problem. I am using R 2.11.0 and Kile v 2.0.83 on an OpenSUSE11.2 installation (KDE 4.3 environment). According to the log (see