similar to: Extension provokes crash in unzReadCurrentFile

I had trouble with some tests for the survival suite last night that I cannot explain. Framework: Ubuntu Linux, R2.11. For testing survival I have a separate directory and Makefile. I pull everything into the local .RData, no packages, library, or namespace. (It's easier to add test modifications to a routine in a chain of calls). A test of survreg + psline would fail because

But note: > zip("hello.zip", "hello.txt") updating: hello.txt (stored 0%) > readChar(unz("hello.zip","hello.txt"),100) [1] "hello" I leave it to you and other wiser heads to figure out. Cheers, Bert On Thu, Oct 24, 2024 at 8:57?AM Iris Simmons <ikwsimmo at gmail.com> wrote: > Hi Mikko, > > > I tried running a few

Hi, you could use "scan" instead, it seems to work fine also when wrapped around "unz". Or, alternatively, you could use "unzip" instead of "unz". It works as expected, i.e. reads the last incomplete line and throws a warning about this. So it seems to me that "unz" creates a non-blocking connection, whereas "unzip" creates a

I get unexpected behavior from "readLines()" and "scan()" depending on how the file is opened with "gzfile" or "unz". More specifically: > file <- gzfile("file.gz") > readLines(file,1) [1] "a\tb\tc" > readLines(file,1) [1] "a\tb\tc" > close(file) It seems that the stream is rewound between calls to readLines.

Hi again, The unz connection is non-blocking by default. I checked do_unz which calls R_newunz which calls init_con and the only place in any of those functions that sets 'blocking' is init_con which sets it to FALSE: https://github.com/wch/r-source/blob/0c26529e807a9b1dd65f7324958c17bf72e1de1a/src/main/connections.c#L713 I'll open an issue on R-bugzilla and see if they're

I am having problems getting the unz() function to work as a connection to start reading a file... z <- unz("c:/temp/stoxx.zip", "close_tmi_components.txt", "r") readLines(z,2) yields the following problems: > z <- unz("c:/temp/stoxx.zip", "close_tmi_components.txt", "r") Error in unz("c:/temp/stoxx.zip",

Hi, I have downloaded a bunch of bz2 files. I wonder if R will be able to unzip them in a batch mode or even one at a time? I was looking at the unz function. But it didn't work well. Say I have a bz2 file in H:/Temp/65502805_532.pair.bz2. Anyone has any suggestion? thanks John > setwd("H:\\Temp\\") > getwd() [1] "H:/Temp" >

I would greatly appreciate some example of correct usage of function unz. I have to download and uncompress the following web compressef file: ftp://ftp.sanger.ac.uk/pub/mirbase/targets/v5/arch.v5.txt.homo_sapiens.zip I tried the following command that does not work: Targets.rec <- readLines(zz <- unz("ftp://ftp.sanger.ac.uk/pub/mirbase/targets/v5/arch.v5.txt.homo_sapiens.zip"))

Dear list, I'm seeing a strange interaction with readLines() and unz() when reading a file without an empty final line. The final line gets dropped silently: > cat("hello", file = "hello.txt") > zip("hello.zip", "hello.txt") adding: hello.txt (stored 0%) > readLines(unz("hello.zip", "hello.txt")) character(0) The

Dear List, Does somebody know how to get the filename lists in the ziped when "gzfile" or "unz" command is used ? Thanks for your help. Shawn Lee -- The information contained in this communication and any atta...{{dropped}}

Hi List I have a series of zip archives each containing several files. One of these files is called goCats.txt and I would like to read it into R from the archive. It's a simple tab delimited text file. pathToZip <- '/home/iain/Documents/Work/Results/bovineMacRNAData/deAnalysis/afInfection/commonNorm/twoHrs/af2hrs.zip' z <- unz(pathToZip, 'goCats.txt', 'r') zT

I believe https://reviews.llvm.org/D44449 <https://reviews.llvm.org/D44449> should fix this issue. Thanks, Volodymyr > On Apr 2, 2018, at 22:51, Shoaib Meenai via cfe-dev <cfe-dev at lists.llvm.org> wrote: > > Adding cfe-dev, since this is a clang issue. > > From: llvm-dev <llvm-dev-bounces at lists.llvm.org <mailto:llvm-dev-bounces at lists.llvm.org>>

Trying to copy the (binary) header of a input file directly to an output file, I've had repeatable seg faults. The call: writeChar(hdr, outfh, nchars=6144) when hdr just contains one empty string seems to be the culprit. The stack traces weren't all that illuminating, with sig 11 in memory-related functions following this. But in src/main/connections.c it looks like do_writechar

Hi Reading the help for ?unz I was wondering if I can read data into R from within an zipfile that is on some website, like maybe: dtaa = read.table(unz("http://www.ats.ucla.edu/stat/examples/alsm/alsm.zip","Ch01pr19.dat")) Thanks for letting me know if you came acros such a thing before. Toby

Hi Sorry, I am clearly missing something here. I want to read this file directly: ftp://ftp.sanger.ac.uk/pub/mirbase/targets/v5/arch.v5.txt.gallus_gallus. zip I tried using read.table(gzfile("ftp://ftp.sanger.ac.uk/pub/mirbase/targets/v5/arch.v5 .txt.gallus_gallus.zip")) But I got an error: Error in open.connection(file, "r") : cannot open the connection In addition:

Adding cfe-dev, since this is a clang issue. From: llvm-dev <llvm-dev-bounces at lists.llvm.org> on behalf of Jim Meyering via llvm-dev <llvm-dev at lists.llvm.org> Reply-To: Jim Meyering <jim at meyering.net> Date: Monday, April 2, 2018 at 8:40 PM To: "llvm-dev at lists.llvm.org" <llvm-dev at lists.llvm.org> Subject: [llvm-dev] trivial input provokes failed

While attempting to reduce a ubsan-specific bug, I stumbled upon the following. [I would have filed a bug report, but don't have an account, and so requested one per https://bugs.llvm.org/ about 7 hours ago -- but still no response, so am sending this instead. ] Using clang built from latest master of about 5 hours ago: $ echo struct a typename a | clang -x c++ - <stdin>:1:19: error:

Hello, is there a way to pass a connection to a file in a zipped archive as argument (instead of a file name of unzipped file) to shell command "cut". In general, is it possible to pipe output of a R function to a shell command? How? I want to do something like: z = unz("zipArchive.zip", "fileASCII.ASC") # open connection open(z) # cut lines of the ASCII file in

This is a question about the use of the Cox proportional hazards model to analyze event histories. I am looking at the responses of sympathetic nervous system activity to a stimulus. The activity I observe is a burst that can only occur once per heart beat cycle (e.g., a binary count). Typically bursts occur in 60-80% of the heart cycles * sensory stimuli can modify these burst probabilities.

Hello R-help! I just wanted to share a tip might help others of us stuck on R. The documentation for zip.file.extract is rather scant, and a few examples would. When using zip.file.extract, the first argument should be the full (or relative) path and the second the name of the zip file, it seems. While this is counterintuitive to me, that it should get the part from the first argument,