similar to: calling R from PHP error

I'm trying to install R under Ubuntu 7.10 (gutsy; Linux 2.6.22-15-generic x86_64). Following the instructions at http://cran.r-project.org/bin/linux/ubuntu/README, I installed r-base, r-base-core, and r-base-dev without any problems. When I open R, however, I get the message "Can't open /usr/lib64/R/etc/ldpaths". That file is linked to /etc/R/ldpaths, which doesn't exist

Hi I'm trying to install R on Ubuntu 11.10 and it seems to install fine with both apt-get and dpkg but always when I start R I get jt42@bioinf4:~# R /usr/local/bin/R: line 237: /usr/lib/R/etc/ldpaths: No such file or directory R version 2.14.0 (2011-10-31) Copyright (C) 2011 The R Foundation for Statistical Computing ISBN 3-900051-07-0 Platform:

On Thu, 21 Apr 2016 08:23:32 +0000 Martyn Plummer <plummerm at iarc.fr> wrote: > From: Martyn Plummer <plummerm at iarc.fr> > To: "cireyapmin at gmail.com" <cireyapmin at gmail.com>, > "r-sig-fedora at r-project.org" <r-sig-fedora at r-project.org> Subject: > Re: [R-sig-Fedora] Cannot Run On The Command Line Date: Thu, 21 Apr > 2016

I've just installed r-base (several times!) using the instructions at http://cran.us.r-project.org/bin/linux/ubuntu/ and for some reason it is not creating a /etc/R/ldpaths file. I've tried a few times, tried purging, and removing everything in /etc/R and /usr/lib/R as suggested by Dirk, and reinstalling but still get $ R /usr/bin/R: line 236: /usr/lib/R/etc/ldpaths: No such file

Hello! I'm trying to install R-3.0.1 on an Ubuntu machine (64 bit, version 13.04). I have uninstalled and installed several times, but to no avail. I keep getting errors about missing ldpaths, and installing packages does not work at all. Here is the information: erin@erin-Lenovo-IdeaPad-Y480:~$ sudo apt-get install r-base Reading package lists... Done Building dependency tree Reading

$ R /usr/bin/R: line 238: /usr/lib64/R/etc/ldpaths: Permission denied $ rpm -q R R-3.2.3-2.fc23.x86_64 That /usr/bin/R#L238 is: . "${R_HOME}/etc${R_ARCH}/ldpaths" I noticed the error began bursting shortly after I ran dnf update. An excerpt from dnf's transaction logs: $ dnf history info <ID> Upgraded setroubleshoot-3.3.5-2.fc23.x86_64 @updates Upgrade

Hi Everybody, I made R (v. 2.11.1) from source with the following config option: ./configure --prefix=/mnt/ami-centos5.5-64bit-base \ --exec-prefix=/mnt/ami-centos5.5-64bit-base \ --with-tcltk All seemed to go well, but when I tested it with: /usr/sbin/chroot /mnt/ami-centos5.5-64bit-base R It told me: /bin/R: line 217:

I have a data set like this in one .txt file (cols separated by !): APE!KKU!684! APE!VAL!! APE!UASU!! APE!PLA!1! APE!E!10! APE!TPVA!17122009! APE!STAP!1! GG!KK!KK! APE!KKU!684! APE!VAL!! APE!UASU!! APE!PLA!1! APE!E!10! APE!TPVA!17122009! APE!STAP!1! GG!KK!KK! APE!KKU!684! APE!VAL!! APE!UASU!! APE!PLA!1! APE!E!10! APE!TPVA!17122009! APE!STAP!1! GG!KK!KK! it contains over 14 000 000 records. Now

Dear all, I am stuck at applying loop function for creating separated plots. I have coding like below: dataset.table <- table(data.frame(var1=c(1,2,3,1,2,3,1),colour=c("a","b","c","c","a","b","b") )) kk = function(f) { ls=as.character(f) pie(dataset.table[ls,],main=ls)

This came up on r-help but indicates a bug. dnbinom(x,n,p) calls dbinom_raw(n-1,...) which returns 0 for n<1. -thomas ---------- Forwarded message ---------- Date: Thu, 08 Feb 2001 17:10:23 +0000 From: Yudi Pawitan <yudi@stat.ucc.ie> To: Mark Myatt <mark@myatt.demon.co.uk> Cc: R-Help <r-help@stat.math.ethz.ch> Subject: Re: [R] Goodness of fit to Poisson / NegBinomial

Hello, how to merge a data.frame and a matrix by one column in the data.frame and rownames of the matrix? df <- data.frame(col1=c("kk","yy","kk"),col2=c(6,4,3)) > df   col1 col2 1   kk    6 2   yy    4 3   kk    3 m<-matrix(c(3,8,56,9), nrow=2, dimnames = list(c("aa","kk"),c("col1","col2"))) > m    col1 col2 aa   

Dear all, I am dealing with the following (apparently simple problem): For some reasons I am interested in passing variables from a dataframe to a specific environment, and in fitting a standard glm: dati<-data.frame(y=rnorm(10),x1=runif(10),x2=runif(10)) KK<-new.env() for(i in 1:ncol(dati)) assign(names(dati[i]),dati[[i]],envir=KK) #Now the following two lines work correctly:

Dear folks? Is there a function to correctly find (and count) the NAs in a factor when exclude=NULL, regardless of whether their origin is in the original data or by subsequent assignment? In example number 1 below, where NAs are assigned by is.na()<-, testing the factor with is.na() finds the correct number of NAs. In example number 2, where the NAs are from the data, neither is.na(), ==NA,

I've redirected this reply from r-help to the bugs list. On 11/3/2006 8:25 AM, vito muggeo wrote: > Dear all, > I am dealing with the following (apparently simple problem): > For some reasons I am interested in passing variables from a dataframe > to a specific environment, and in fitting a standard glm: > > dati<-data.frame(y=rnorm(10),x1=runif(10),x2=runif(10)) >

Hi, I've spotted a possible memory leakage/violation in the latest R v2.1.1 patched and R v2.2.0dev on Windows XP Pro SP2 Eng. I first caught it deep down in a nested svd algorithm when subtracting a double 'c' from a integer vector 'a' where both had finite values but when assigning 'a <- a - c' would report NaNs whereas (a-c) alone would not. Different runs

Hi there, I am trying to understand how AliasAnalysis works out in LLVM. I used the following simple test-case (test4.c): -- void test() { int *jj, *kk; int aa = 100; jj = &aa; *jj = 300; } int main() { test(); return 0; } -- Then I did "llvm-gcc -emit-llvm -c -o test4.bc test4.c" to get bc. I tried the following 2 ways to get what I expect to get as

When using R on a linux machine (ubuntu 8.10) which DOES NOT have LD_LIBRARY_PATH set (I particularly have it NOT set because it causes problems), the script ldpaths will set LD_LIBRARY_PATH to the R Lib path (in my case $R_HOME/lib:). The placement of the colon makes my system think that the directory "." is also on that lib path. This causes real problems when trying to run R

Hello all: I don't know what I'm doing bad, but --link-dest does not work for me: I have three directories, the original one, the first copy and the second copy I want to populate: $ ls -li total 12 1761433 drwxr-xr-x 2 envite envite 4096 dic 10 14:04 copy1 1761434 drwxr-xr-x 2 envite envite 4096 dic 11 01:18 copy2 1761432 drwxr-xr-x 2 envite envite 4096 dic 10 14:04 origin $ ls -li *

Hi, When validating users on my Linux system against an ActiveDirectory, the Windows event log are filled with messages like these (Windows Event ID 675): Pre-authentication failed: User Name: linux$ User ID: KK\linux$ Service Name: krbtgt/KK.LOCAL Pre-Authentication Type: 0x0 Failure Code: 0x19 Client

Hello, I am using read.table to read files directly from a public ftp site. I have a general list of files that may or may not exist in the ftp directory, but my hope was that R would read the file if it existed and ignored it if it didn't exist and move on to the next one. However, when R arrives at a file that does not exist I get the error message "Error in file(file, "rt") :