similar to: Problem loading rJava...

Morning All: Having problems installing this one into my R setup and wondered if anyone on the list had the same problem and found a workable solution. First to the system particulars: OS is the Hardy Heron edition of Ubuntu Linux R version is 2.13.1 Java installation is sun-java6 Next up is the result of javareconf: R CMD javareconf Java interpreter : /usr/bin/java Java version : 1.5.0

Having difficulties getting rJava to install on my Debian Squeeze box. Perused the R-help list and tried some things that have worked for others but not for me. Below is the output of my attempted build, R CMD javareconf -e, and sessionInfo(). Note I tried the R CMD javareconf also as root, restarted R after each of these, all no help. * Installing *source* package ?rJava? ... checking for

Dear all, I installed the amd64 cran2deb [1] JGR binaries on a fresh Debian testing, and JGR is missbehaving. When JGR starts up, one core of the CPU goes to 100% and stays there, even though I am keeping it idle and not performing any operation. I tried JGR with both sun-java6-jdk and openjdk-6-jdk, debian-liv:/home/liviu# update-alternatives --config java There are 4 choices for the alternative

Hi, I would like to test the new package RGG (R Gui Generator). This package requires the installation of several other package. One of them is rJava. I installed sun-java6-jdk and run the R CMD javareconf but the installation still fails ! Do you have any ideas ? * Installing *source* package ‘rJava’ ... checking for gcc... gcc -std=gnu99 checking for C compiler default output file

As ever, I learn from this: I didn't know apt-file. Got it, installed it, used it: root at DebianAdvent:/home/chris/Downloads/gmp-6.1.2# apt-file search jni.h android-libnativehelper-dev: /usr/include/android/nativehelper/jni.h android-platform-frameworks-native-headers: /usr/include/android/android/asset_manager_jni.h android-platform-frameworks-native-headers:

Hi Jeff!! I really don?t know if running R CMD javareconf with sudo has posed a problem here, now or in the past. What I know is sometimes it?s the only way to really config it, if I don?t run with sudo, in the end it asks me if I want to overwrite the configuration from root override rw-r--r-- root/admin for /usr/local/Cellar/r/3.4.4/lib/R/etc/Makeconf? (y/n [n]) y override rw-r--r--

I am not a Mac user, but I do use Linux and I would recommend not running R with sudo unless you are an admin ninja. That defensive practice would render the answer to your question moot. It is possible that your problem may have started with inappropriate use of sudo in configuring java, but configuring Java is not on-topic here. -- Sent from my phone. Please excuse my brevity. On March 27,

Hi! I?m on macOS 10.13.3 and just installed the new Java 10 using Homebrew Cask. I also have installed R with Homebrew. Everything seems to work fine, however I just get different outputs if I run sudo R CMD javareconf or R CMD javareconf. With sudo I get pointed to Java 9 and without sudo I get pointed to Java 10. I really don?t know why. Without sudo: $ R CMD javareconf

Esteemed useRs and Devs, Attempts to update package:rJava to the latest version have failed. See my code and output below. Notably, as suggested here http://stackoverflow.com/questions/3311940/r-rjava-package-install-failing $ sudo apt-get install r-cran-rjava ran successfully without error or warning, but my rJava package is not updated, and remains un-updatable... Greatly appreciate any

attempting to install rJava on R-2.7.0, x86_64 platform, config.log shows the following error: configure:3880: checking whether JNI programs can be compiled configure:3898: gcc -m64 -std=gnu99 -o conftest -g -O2 -I/path/to/x86-64-linux/jdk-1.6.0_06/jre/../include conftest.c -L/path/to/x86-64-linux/jdk-1.6.0_06/jre/lib/amd64/server -L/path/to/x86-64-linux/jdk-1.6.0_06/jre/lib/amd64

Thanks Dirk and Enrico, First clarification: I'm in this mess because I'm trying to run R 3.5.2 within Debian stable (9/"sretch") using the stretch-cran35 repository. That uses and provides r-api-35 but many of the packages depend upon r-api-3. As Johannes said a day or so back, the way around this is to use install.packages() in R to get the packages you want. That leads you

Hi all I have problems installing rJava on my system. ######## My system: > R.version # at R prompt platform x86_64-pc-linux-gnu arch x86_64 os linux-gnu system x86_64, linux-gnu status major 2 minor 8.1 year 2008 month 12 day 22 svn rev 47281 language R version.string R version 2.8.1

Hi, I am unable to install the package rJava. I tried doing what the output suggests, but it doesn't help. How can I get R to find/recognize my Java installation? I am running R-2.15.0. waichler at snow> sudo R CMD javareconf Java interpreter : /usr/bin/java Java version : 1.6.0_22 Java home path : /usr/lib/jvm/java-1.6.0-openjdk-1.6.0.0/jre Java compiler : /usr/bin/javac Java

Installing rJava fails consistently, whether installed via the command line as below, or through "install.packages( 'rJava' )", and whether 0.84 or 0.85 is used, with the message :- "checking JNI data types... configure: error: One or more JNI types differ from the corresponding native type. You may need to use non-standard compiler flags or a different compiler in order to

Wow, this has amplified my respect and gratitude for the R Debian repositories. Doing all the install.packages() and following the clues about missing dependencies has taken hours! However, I have almost all the packages I want installed on this machine and Rstudio and the shiny server are installed and running fine. Bizarrely, to my mind, I am totally failing on rJava and hence a number of

> library(rJava) Error in library(rJava) : there is no package called 'rJava' > install.packages("rJava") Warning in install.packages("rJava") : argument 'lib' is missing: using '/usr/local/lib/R/site-library' --- Please select a CRAN mirror for use in this session --- Loading Tcl/Tk interface ... done trying URL

Hi All, Running R CMD javareconf -e (or R CMD javareconf as root I am rot on my machines) Fails. / [root at penguins1lanalt etc]# R CMD javareconf Java interpreter : /usr/bin/java Java version : 1.6.0_30 Java home path : /usr/java/jre1.6.0_30 Java compiler : not present Java headers gen.: Java archive tool: Java library path:

Hi, I use Redhat Linux for R. Now I am trying to use the rJava library. I downloaded JRE beta 2 from Sun. I typed root@~]# R CMD javareconf Java interpreter : /usr/bin/java Java version : 1.6.0-beta2 Java home path : /usr/java/jre1.6.0 Java library path: $(JAVA_HOME)/lib/amd64/server:$(JAVA_HOME)/lib/amd64:$(JAVA_HOME)/../lib/amd64::/usr/java/packages/lib/amd64:/lib:/usr/lib JNI linker

I am really no java lover, but for some reason had interested to look at an R package that depends on rJava... and when I tried, I was *again* (it is my usual experience for more than 10 years) unable to get rJava installed, as indeed, also 'R CMD javareconf' ended in an error that jni.h was not found. I see the issue here,

Hi all, i'm trying to install JGR on linux (see bottom), but it runs into errors. The bottom of the sequence below shows "JavaJD could not be found" Any suggestion, please? $ sudo apt-get install sun-java6-jdk $ sudo update-alternatives --config java There are 5 alternatives which provide `java'. Selection Alternative ----------------------------------------------- 1