similar to: msProcess, creating msSet file(s)

I have two chromatograms I want plotted on the same axes. I would like the plots to be transparent, so the first chart is not obscured. I have tried adjustcolor(..., alpha.f=0.3), the problem is that my chromatogram is so dense with datapoints that they overlap and the entire graph just ends up a solid color. The second histogram still obscures the first. Consider this example: col1 <-

I am pretty pleased with baselines I fit to chromatograms using the runquantile() function in caTools(v1.6) when its probs parameter is set to 0.2 and its k parameter to ~1/20th of n (e.g., k ~ 225 for n ~ 4500, where n is time series length). This ignores occasional low- side outliers, and, after baseline subtraction, I can re-adjust any negative values to zero. But runquantile's

Hallo! <?xml:namespace prefix = o ns = "urn:schemas-microsoft-com:office:office" /><o:p></o:p> <o:p> </o:p> I want to compare different samples with the formula … <o:p></o:p> <o:p> </o:p> Here some example data: <o:p></o:p> <o:p> </o:p> <o:p> </o:p> sample1<o:p></o:p>

Hi, I was wondering if anyone knows of a package that contains the ability for peak/valley detection. Here is an example of what I'm looking for, only problem is that it's written in Matlab. http://www.billauer.co.il/peakdet.html Thanks for any help in advance. -Joe

Interesting problem. I would discretize the x-values and interleave them. Lines from one dataset still overlap, so you see high- density and low-density regions, but lines from the other dataset are drawn into the interval. Like so: interleave <- function(x, MIN, MAX, N, nChannel = 2, channel) { isp <- seq(MIN, MAX, length.out = N + 1) # interleave support points offset <-

Hi All, I am new to Ruby and ROR I were trying to create small DSL for conditional validations valid_with_cond :bypass_validation do if self.addresses > 3 errors[:base] << "Can not have more than 3 addresses". end end By this I wanted to create array of method and call them all in custom validation method. this above code I wanted to do attr_accessor

Hi, I'm using linux 2.6.21.5 and our kernel is freeze. The problem is, if I create a Software bridge using $brctl command. and add two interfaces say, eth0.0 and eth0.1 using $brctl addbr br-lan $brctl addif br-lan eth0.0 $brctl addif br-lan eth0.1 and when i send traffic from a host connected to one port to host connected at other end, soon all the memory is dried up and and kernel

Hi, I'm trying to match peaks between chromatographic runs. I'm able to match peaks when they are chromatographed with the same method, but not when there are different methods are used and spectra comes in to play. While searching I found the ALS package which should be usefull for my application, but I couldn't figure it out. I made some dummy chroms with R, which mimic my actual

ear All, I configured Postfix 2.3.3-2 on CentOS 5.2 using SASL Dovecot authentication put I am facing the problem to receive mails . My postconf -n result is: [root at mails ~]# postconf -n alias_database = hash:/etc/aliases alias_maps = hash:/etc/aliases command_directory = /usr/sbin config_directory = /etc/postfix daemon_directory = /usr/libexec/postfix debug_peer_level = 2

I have a data frame like this xx<-data.frame(cbind(Sample=c('Ctrl_6h','1+0_6h','1+200_6h','1+5k_6h','Ctrl_5K_6h','ConA_6h'), IFIT1=c(24,25,24.7,24.5,24.2,24.8))) grep('[[:digit:]]h',xx$Sample) yy<-xx$Sample strsplit(yy,"_") I have to extract the time information separated by '_' in the sample

I have a data file where each entry is indexed by the time in seconds since epoch (e.g. 1046315697). Is there an easy way to convert this time value into a more friendly time (such as Month-Year) when plotting it? I searched through the manual, mailing lists, and functions like as.POSIXct and strptime, but didn't find what I need. Thanks, Sharad.

Hello Gurus I have two correlation matrices 'xa' and 'xb' set.seed(100) d=cbind(x=rnorm(20)+1, x1=rnorm(20)+1, x2=rnorm(20)+1) d1=cbind(x=rnorm(20)+2, x1=rnorm(20)+2, x2=rnorm(20)+2) xa=cor(d,use='complete') xb=cor(d1,use='complete') I want to combine these two to get a third matrix which should have half values from 'xa' and half

Hello gurus, I have some variables, and i am creating combinations for analysis in the end i need these variables to be displayed like "LEPTIN+SAA+PTH". currently i am using loop to perform this. I would appreciate any pointers to do it without the loop. > mols=c("LEPTIN","SAA","PTH","sEGFR") > samples=mols[1:3] > samples [1]

Hi, I am using virConnectOpen(const char *uri) to connect to the local hypervisor. When uri is set to "lxc:///", an error gets logged in /var/log/messages about failed connection. But I do not see any error for "xen:///". The machine does not have these drivers installed, and I am using libvirt 0.6.3. My questions are - 1. Why I see error in /var/log/messages for container

Hi, I have a host with 6 VMs set to autostart. When this host reboots, it starts libvirtd, pegasus cimom and libvirt-cim. It also restarts the VMs. Intermittently we noticed a core during start up that points to the last call made by libvirt-cim to "virInitialize". I am thinking that it is a timing issue where virInitialize is called while libvirt is trying to autostart the VMs.

Hello! I am having an issue with the OrgMassSpecR package. I run my HPLC using a DAD detector. My raw data is exported form chemstation as a csv file. I then upload the csv into Rstudio no problem. Using the DrawChromatogram function, I get a nice chromatogram, and my retention time, peak area, and apex intensity values are given as well. The problem comes with the peak area value given. The

I'm in the process of converting some S3 methods to S4 methods. I have this function : setGeneric("enrichmentCalc", function(rs, organism, seqLen, ...){standardGeneric("enrichmentCalc")}) setMethod("enrichmentCalc", c("GenomeDataList", "BSgenome"), function(rs, organism, seqLen, ...) { ... ... ... })

http://r.789695.n4.nabble.com/file/n3312061/x_and_y_values.txt x_and_y_values.txt I have the absorbance values form HPLC Chromatogram. I need to find the peaks in datapoints and area under each peak. I am not sure how how to find the peaks, I tried couple of libraries and peak function but they return me a list of values which when computed from area turns out to be huge nnumbers. In the

Hello, I am trying to filter a data set like below so that the peaks in the Phase value are more obvious and can be identified by a peak finding function following the useful advise of Carl Witthoft. I have written the following for(i in length(data$Phase)){ newphase=if(abs(data$Phase[i+1]-data$Phase[i])>6){ data$Phase[i+1] }else{data$Phase[i] } } I get the following error which I have not

Following xml file was used to create storage pool using 'virsh pool-create <xml>' <pool type='dir'> <name>my-diskpool</name> <uuid>2fbc894e-7619-6cda-a33c-b27fae5fbe8b</uuid> <capacity>136024670208</capacity> <allocation>11416657920</allocation> <available>124608012288</available> <source>