similar to: reshape::rename package unable to install !?!

Greetings all, I would like to append a 4 digit number suffix to the names of my files for later use. What I am using now only produces 1 or 2 or 3 or 4 digits. ############ for (i in 1:1000) { temp <- (kegg [i,]) temp <- merge (temp, subrichcdt, by="gene") file.name <- paste ("kegg.subrichcdt.", i, ".txt", sep="")

Greetings all, I am getting an error message that is stifling me. Any ideas? > ## Define Directories ## > load_from <- "/home/mcc/Dropbox/abrodsky/kegg_combine_data/" > save_to <- "/home/mcc/Dropbox/abrodsky/ttest_results/" > > ############################### > ## Define Columns To Compare ## > compareA <- "log_b_rich" > compareB

Greetings all, I am calculating two t-test values for each of many files then save it to file calculate another set and append, repeat. But I can't figure out how to write it to file and then append subsequent t-tests. (maybe too tired ;} ) I have tried to use "dump" and "file.append" to no avial. ttest_results = tempfile() two_sample_ttest <- t.test (tempA, tempB,

> library(reshape2) > x = melt(airquality, id=c('month', 'day')) With reshape I can cast with multiple functions: > library(reshape) > cast(x, month+variable~., c(mean,sd)) month variable mean sd 1 5 ozone 23.615385 22.224449 2 5 solar.r 181.296296 115.075499 3 5 wind 11.622581 3.531450 4 5 temp 65.548387

Hi all, I have a list that I got from a web page that I would like to crunch. Unfortunately, the list has some unusual separators in it. I believe the columns are separated by 1 space and 1 tab. I tried to insert this into the read.table( ..., sep=" \t", ...) but got an error that said something like 'only one byte separators can be used. I have thought about using a gsub to

Greetings all, I am getting this error that is driving me nuts... (not a long trip, haha) I have a set of files and in these files I want to calculate ttests on rows 'compareA' and 'compareB' (these will change over time there I want a variable here). Also these files are in many different directories so I want a way filter out the junk... Anyway I don't believe that this is

Hi, I used to use reshape and moved to reshape2 (R 2.15.1). Now I tried some of my older scripts and was surprised that my cast function wasn't working like before. What I did/want to do: 1) Melt a dataframe based on a vector specifying column names as measure.vars. Thats working so far: dfm <- melt(df, measure.vars=n, variable_name = "species", na.rm = FALSE) 2) Recast the

This does not use reshape/reshape2, but it is pretty straightforward. Assuming X is your example data: > Y <- split(X[, 2], X[, 1]) > vals <- sapply(Y, length) > pad <- max(vals) - vals > Y2 <- lapply(seq_along(Y), function(x) c(Y[[x]], rep(NA, pad[x]))) > names(Y2) <- names(Y) > X2 <- do.call(cbind, Y2) > X2[, 1:6] 1957 1958 1959

Hi all, I have played a bit with the "reshape" package and function along with "melt" and "cast", but I feel I still don't have a good handle on how to use them efficiently. Below I have included a application of "reshape" that is rather clunky and I'm hoping someone can offer advice on how to use reshape (or melt/cast) more efficiently. #For this

The reason it doesn't work easily with reshape/reshape2 is that the order of the rows is not determined. Your answer could be 1957 1958 ... 1985 1986 0.8625000 0.7500000 ... 0.7307692 0.23750000 0.0733945 0.6435644 ... NA 0.05769231 0.5096154 NA ... NA 0.65137615 or 1957 1958 ... 1985 1986 0.0733945 0.6435644 ... NA

Hi, I'd like to merge mutliple dataframes from a list of dataframes by some common columns. The approach for simply merging 2 dataframes is working with: merge(df1,df2,by=c("col1","col2","col3"),all=TRUE) For mutliple dataframes in a list I try to use the merge_all command from the package reshape. The documentation states that the command takes a list of

Hi Tom, Or perhaps: #assume the data frame is named "tadf" library(prettyR) stretch_df(tadf,1,2) Jim On Thu, Jul 6, 2017 at 6:50 AM, Ista Zahn <istazahn at gmail.com> wrote: > The reason it doesn't work easily with reshape/reshape2 is that the > order of the rows is not determined. Your answer could be > > 1957 1958 ... 1985 1986 >

I'm in the middle of my own little intellectual exercise comparing dcast() and reshape() and have successfully stumped myself. I want to melt() a data frame, then dcast() it into a new form. After doing so, I want to duplicate the process using reshape(). So far, I can do the melt and cast require(reshape2) Raw <- data.frame(site = c(1, 1, 1, 1, 2, 2, 2, 2), id =

Hi all: I'm struggling with getting my data re-formatted using functions in reshape/reshape2 to get from: 1957 0.862500000 1958 0.750000000 1959 0.300000000 1960 0.287500000 1963 0.675000000 1964 0.937500000 1965 0.025000000 1966 0.387500000 1969 0.087500000 1970 0.275000000 1973 0.500000000 1974 0.362500000 1976 0.925000000 1978 0.712500000 1979 0.337500000 1980 0.700000000 1981 0.425000000

Greetings all, I am curious to know if either of these two sets of code is more efficient? Example1: ## t-test ## colA <- temp [ , j ] colB <- temp [ , k ] ttr <- t.test ( colA, colB, var.equal=TRUE) tt_pvalue [ i ] <- ttr$p.value or Example2: tt_pvalue [ i ] <- t.test ( temp[ , j ], temp[ , k ], var.equal=TRUE) ------------- I have three loops, i, j, k. One to test the all of

I seem to be doing something really stupid or missing something really obvious but what? I have a simple three column data.frame that I would like to reshape to wide preferably using reshape2. An example from http://stackoverflow.com/questions/9617348/reshape-three-column-data-frame-to-matrix looked perfect except I wanted a data frame but it seemed okay. I just changed acast to dcast and it

Hi, I'm a total beginner in R and this question is probably very simple but I've spent hours reading about it and can't find the answer. I'm trying to reshape a data table from long to wide format. I've tried reshape() and cast() but I get error messages every time and I can't figure why. In my data, I have the length of two fish from each family. My data table (called

This is my reproducible example: example<-structure(list(SENSOR = structure(1:6, .Label = c("A", "B", "C", "D", "E", "F"), class = "factor"), VALUE = c(270, 292.5, 0, 45, 247.5, 315), DATE = structure(1:6, .Label = c(" 01/01/2010 1", " 01/01/2010 2", " 01/01/2010 3", " 01/01/2010

A late friday afternoon coding question. I'm having a hard time thinking of the correct search terms for what I want to do. If I have a df like this: a <- data.frame(name=c(rep('a',10),rep('b',15)),year=c(1971:1980,1971:1985),amount=1:25) name year amount 1 a 1971 1 2 a 1972 2 3 a 1973 3 4 a 1974 4 5 a 1975 5 6 a 1976

Hi - I'm up against a complicated reshape problem. I have data of the form X1,Y1,hr1,hr2,hr3 X1,Y2,hr1,hr2,hr3 X1,Y3,hr1,hr2,hr3 X2,Y1,hr1,hr2,hr3 X2,Y2,hr1,hr2,hr3 X2,Y3,hr1,hr2,hr3 where X and Y are factors and the hr(1,2,3) are values. I need it as ,X1, X2 Y1,hr1,hr1 Y1,hr2,hr2 Y1,hr3,hr3 Y2,hr1,hr1 Y2,hr2,hr2 Y2,hr3,hr3 .., Any hints? I've been at it for hours. p -- View