similar to: function to compute pvalue for comparing two ROC curves

Dear R users, pROC is a package to compare, visualize, and smooth receiver operating characteristic (ROC) curves. The package provides the following features: * Partial or full area under the curve (AUC) computation * Comparison of two ROC curves (curves and AUC) * Calculating and plotting confidence intervals * Smoothing of the ROC curve * Coordinates extraction ('coords' function).

Dear R users, pROC is a package to compare, visualize, and smooth receiver operating characteristic (ROC) curves. The package provides the following features: * Partial or full area under the curve (AUC) computation * Comparison of two ROC curves (curves and AUC) * Calculating and plotting confidence intervals * Smoothing of the ROC curve * Coordinates extraction ('coords' function).

Hi, I understand for 1 d classifiers, you can use ROCR package. Is there a package you can plot ROC curve for 2d classifiers? One of my colleagues asked me about this. I have been quite puzzled, conceptually, how you can do the ROC curve for 2d classifiers. Can someone share his/her knowledge or experience? Thanks in advance. -- Waverley @ Palo Alto

I might be missing something but I thought that AUC was a measure for comparing ROC curves, so there is nothing else needed to "compare" them. The larger AUC is the higher correlation of 2 variables compared. No other measures or calculations are needed. Jarek Tuszynski -----Original Message----- From: r-help-bounces at stat.math.ethz.ch [mailto:r-help-bounces at stat.math.ethz.ch] On

Dear all, I try to compare the performances of several parameters to diagnose lameness in dogs. I have several ROC curves from the same dataset. I plotted the ROC curves and calculated AUC with the ROCR package. I would like to compare the AUC. I used the following program I found on R-help archives : From: Bernardo Rangel Tura Date: Thu 16 Dec 2004 - 07:30:37 EST

Hi, I'm trying to set up a prediction software, now i testing the performance of my method, so i need to calculate a ROC curve, specially auc, cut-off, sens and spec, i just looking at ROCH package, but it's a mass for me, i'm not a math guy and I'm getting lost Could any of you recommend me an easy-to-use package to do this task? i just have a list of positive/negative samples

Hello I am trying to make a graph of 10 different lines built each from 4 different segments and to add a darker line that will represent the average of all graphs - all in the same plot.Actually each line is a ROC plot The code I'm using for plotting one line is as follows: logit.roc.plot <- function(r, title="ROC curve") { old.par <- par(no.readonly = TRUE);

Hello I am trying to make a graph of 10 different lines built each from 4 different segments and to add a darker line that will represent the average of all graphs - all in the same plot.Actually each line is a ROC plot The code I'm using for plotting one line is as follows: logit.roc.plot <- function(r, title="ROC curve") { old.par <- par(no.readonly = TRUE);

Hi Brian, Your underlying dataset for the ROC curve only has 4 unique values for specificity, even though there are 23 elements in the vector, hence the step function nature of the first plot. The default smoothing in the smooth() function is "binormal". You might try one of the other smoothing options to see the result and whether they make visual sense. In the absence of smoothing,

> On Jun 26, 2017, at 11:40 AM, Brian Smith <bsmith030465 at gmail.com> wrote: > > Hi, > > I was trying to draw some ROC curves (prediction of case/control status), > but seem to be getting a somewhat jagged plot. Can I do something that > would 'smooth' it somewhat? Most roc curves seem to have many incremental > changes (in x and y directions), but my plot

Hallo! Does anybody know a way to calculate the sample size for comparing AUC of ROC curves against 'by chance' with AUC=0.5 (and/or against anothe AUC)? Thanks! Karl

Hi, I was trying to draw some ROC curves (prediction of case/control status), but seem to be getting a somewhat jagged plot. Can I do something that would 'smooth' it somewhat? Most roc curves seem to have many incremental changes (in x and y directions), but my plot only has 4 or 5 steps even though there are 22 data points. Should I be doing something differently? How can I provide a

Dear R-philes, I am having some trouble averaging across multiple runs of a classifier in an ROC Curve. I am using the ROCR package and the plot() method. First, I initialize a list with two elements where each element is a list of predictions and labels: vowel.ROC <- list(predictions=list(), labels=list()) For every run of the classifier, I append the scores and labels to their

Hello all, Trying to get this piece of code to work on my data set. It is from http://www.itc.nl/personal/rossiter. logit.roc <- function(model, steps=100) { field.name <- attr(attr(terms(formula(model)), "factors"), "dimnames")[[1]][1] eval(parse(text=paste("tmp <- ", ifelse(class(model$data) == "data.frame", "model$data$",

Hello, I would like to use the ROCR package to draw ROC curves and compute AUC values. However, in the specific context of my application, the true positive rates and false positive rates are already provided by some upstream method. Of course, I can draw a ROC plot with the following command : plot(x=FPrate, y=TPrate, "o", xlab="false positive rate", ylab="true

Hi, Dear all R users: Does someone know whether R can calculate the Receiver Operating Characteristic (ROC) Curves? I didn't find it from the packages. Thanks a lot. --- Xin

Hi, Is there any package or code to compare and display correlated ROC curves in R? Thanks, Reza [[alternative HTML version deleted]]

Hi, I don't really understand how ROCR works. Here's another example with a randomforest model: I have the training dataset(bank_training) and testing dataset(bank_testing) and I ran a randomForest as below: bankrf<-randomForest(y~., bank_training, mtry=4, ntree=2, keep.forest=TRUE,importance=TRUE) bankrf.pred<-predict(bankrf, bank_testing)

Dear all, I am looking for an R package that allows me to calculate and plot the confidence intervals for the roc curve using for example some bootstrapping. I tried "ROCR" who seems doing such work but i couldn't find the right option in it. Many thanks Bests Marc _________________________________________________________________ [[alternative HTML version deleted]]

I did some serach around. It seems that ROC curve computation is not supported on R. Anyone has some leads? Thanks. Jason ===== Jason G. Liao, Ph.D. Division of Biometrics UMDNJ School of Public Health 335 George Street, Suite 2200 New Brunswick, NJ 08903-2688 phone (732) 235-9748, fax (732) 235-9777 http://www.geocities.com/jg_liao __________________________________________________ Great