similar to: methods package not loaded by default when using Rscript in R2.13

Dear R users, I have just upgraded R from 2.11 to 2.12 on Ubuntu 9.04 (see more informations at the end) from the cran apt-get repository. One of the new things concerning the install.packages() function is stated here : install.packages() and remove.packages() with lib unspecified and multiple libraries in .libPaths() inform the user of the library location used with a message

Dear useRs, When I'm using Hmisc's latex() function with ctable=TRUE on a summary.formula with method="reverse" object and saving in a .tex file, the latter contains an unwanted empty line which makes compilation fail. Here is a brief example : library(Hmisc) test <- data.frame(a=sample(1:30,10),b=sample(c("good","bad","ugly"),10,replace=T))

Dear R users, I'm trying to save the results of separate logistic regression analyses of a dataset according to a categorical factor. For that, I first used a "by" function such as following : temp <- by( data, data$categorical.factor , function(x) summary( glm( formula = data$var1 ~ data$var2 , data = x , family = binomial("logit")))) and it worked perfectly well

Hello, I once used the metawin software to perform a meta-analysis (see metawinsoft, Rosenberg et al.) and produced normal qqplot to test for a potential bias in the dataset. I now want to re-use the same dataset with the package metafor by W. Viechtbauer (great package btw). I run the qqnorm.rma.uni function. I use standardized effect sizes as in metawin. QQplot generated with metafor differs

Dear R users, I have a desktop computer and a laptop, both of them with Ubuntu Lucid. The former has R2.10 installed from Ubuntu repositories (this is the most recent version in the repositories), while the latter has R2.13 from the CRAN repositories. I noticed that postscript files generated with R2.10 are "better" than files generated with the latest release of R, in particular for

Dear list, I encounter an error when I try to use ddply to generate means as follows: fun3<-structure(list(sector = structure(list(gics_sector_name = c("Financials", "Financials", "Materials", "Materials")), .Names = "gics_sector_name", row.names = structure(c("UBSN VX Equity", "LLOY LN Equity", "AI FP Equity",

Buenas tardes, Estoy interesado en ajustar modelos de regresion beta {betareg} a un conjunto de datos en el que se tienen una variable respuesta "y" y ~600K variables independientes. En el codigo en R que se encuentra en la parte inferior presento un ejemplo en el que se tienen 500 variables independientes y la misma respuesta "y" para todos. Tambien se encuentran algunos

I have an unexpected result with the functions lag() and diff() in the plm (panel data) package when used with transform(). These plm-specific functions are supposed to generate lags and first differences within each panel. lag() does not work properly the first time (it reproduces the same series--this is a common time series pitfall), BUT then it does work properly when it is run a second

Dear all, ggplot gives me an error when trying to plot time series data using a date variable as the x axis. g<-structure(list(Date = c("2011-12-23", "2011-12-30", "2012-01-06", "2011-12-23", "2011-12-30", "2012-01-06", "2011-12-23", "2011-12-30", "2012-01-06"), variable = structure(c(1L, 1L, 1L, 2L, 2L,

Hola a todos. Un problema dos pasos. Quiero desde RStudio trabajar con dos versiones de R (pongamos R2.13 y R2.15) desde Linux, Ubuntu 10.04 (lucid). Ya tengo instalada la R.2.15.1. Por defecto trabajo con ella. Pasos que creo he de dar: 1º. Instalar dos versiones de R en la misma maquina. ¿Como se hace?. Me estoy metiendo con el PATH y tal... hay algún protocolo clarito por ahí? 2º.

Hi: When I call str() on an mlogit object, I seem to get warnings. This code is from an example provided in the mlogit documentation: library(mlogit) data("Train", package="mlogit") tr<-mlogit.data(Train, shape="wide", choice="choice", varying=4:11, sep="", alt.levels=c(1,2), id="id")

I have a test directory for the survival suite, and dyn.load has ceased to work in it. Below shows the log: tmt1075% R --vanilla R version 2.12.2 (2011-02-25) Copyright (C) 2011 The R Foundation for Statistical Computing ISBN 3-900051-07-0 Platform: x86_64-unknown-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain

Hi, I am trying to install a bunch of packages via command line and can use some help in getting it right. My env is a freshly setup OpenSuse 11.4 on an amd desktop. I have not yet installed gcc (Will I need gcc to install packages? I have installed make, assuming R might need it.). I have tried it both under R2.12 and R2.13. I have a list of packages to install such as fImport, fGarch, zoo,

Hi Allen and list, See the code below.? I've tried it on R2.13 and R2.8.0 using either heatmap.plus 1.3 or the latest.? All gave the same results.? The problem is in the last line: when I tried to plot two different color bars, the one corresponding to "cm.colors(10)" is not correct (it starts with one black and one red.? Not sure where they're from?) Any ideas? Thanks!

Hi, I'm running a tutorial ("Meta-analyses of data from two (or more) microarray data sets"), which use wgcna package. I have an error in the function modulePreservation (it is below). I'm using R2.13 Can you help me? Do you know, what is happens? Thanks Raquel multiExpr = list(A = list(data=t(badea)),B = list(data=t(mayo))) # two independent datasets (dim = 13447 x 36) mp =

Hi, I would appreciate some help with a very basic problem in using pgfSweave. That is, dealing with the sweave.sty file. After some googling, I did the following : (1) copied the sweave.sty file to my trial folder and (2) added the line?? \usepackage{Sweave}?? to the Rnw file. Are there more elegant ways of dealing with this issue? I have read something about letting Miktex know about the

I am trying to upgrade to R 2.14 from R 2.13.1 I have compied all the libraries from the 'library' directory in my existing installation (2.13.1) to the installed R 2.14. Now I want to uninstall the old installation (R 2.13.1) and I get the error: Internal Error: Cannot find utCompiledCode record for this version of the uninstaller. Any ideas? Kevin [[alternative HTML

Hello, The following piece of code works fine in R.2.10 (ubuntu): switch(distr,         normal    = {if (is.infinite(param["desv"]))                      n <- c(n,"La desv. estándar no puede ser Inf.")                    if (param["desv"]<0)                      n <- c(n,"La desv. estándar no puede ser <0.")                    },        

Dear All, I'm having trouble tweaking a forest plot made using the R meta-analysis package metafor. I did the analysis based upon the correlation coeff from studies and plotted the corresponding forest plot easily > q2<-rma(yi,vi,mods=cbind(grupo),data=qim) > q2 > forest (q2,transf=transf.ztor,digits=3, ... ,alim=c(0,1),refline=.5) > text(-1.55,42,"Esp?cie

Dear List, This may be related to this email thread initiated by Ben Bolker last month: https://stat.ethz.ch/pipermail/r-devel/2011-July/061630.html In answering this Question on StackOverflow http://stackoverflow.com/q/7195628/429846 I noticed that `methods()` was not listing some S3 methods for `plot()` provided by the mgcv package. At the time I wanted to check the development version of R as