similar to: Adjusting p values of a matrix

Dear R users, I need to add 0 in front of a series of numbers, e.g. 1->001, 19->019, Is there a fast way of doing that? Many thanks yan [[alternative HTML version deleted]]

Hi Hilmar, weird. The memory problem seems be due to recursion (my R, version 3.3.3, says: Error: evaluation nested too deeply: infinite recursion / options(expressions=)?, just write traceback() to see how it happens), but why does it segfault with xlsx? Nb xlsx is the culprit: neither rJava nor xlsxjars cause the problem. On the other hand, quick googling for r+xlsx+segfault returns tons of

Hi, this is a problem that occurs in the presence of two libraries (limma, xlsx) and leads to a crash of R. The problematic code is the wrong application of sweep or the product ("*") function on an LIMMA MAList object. To my knowledge, limma does not define a "*" method for MAList objects. If only LIMMA is loaded but not package xlsx, the code does not crash but rather

Hi, On 08/05/17 16:37, Ista Zahn wrote: > One of the key strengths of R is that packages are not akin to "fan > created mods". They are a central and necessary part of the R system. > I would tend to disagree here. R packages are in their majority not maintained by the core R developers. Concepts, features and lifetime depend mainly on the maintainers of the package (even

Dear Martin, On 11/09/2019 09:56, Martin Maechler wrote: > > > I wonder if data.frame(<some non-empty data>) == NULL should also return > > a value instead of an error. R help reads: > > > "At least one of |x| and |y| must be an atomic vector, but > > if the other is a list R attempts to coerce it to the > > type of the atomic

Hello, is there a function for 3D pie representation in R ? Thanks Klaus-P. -- Dr. Klaus-Peter Pleissner Max Planck Institute for Infection Biology Campus Charit? Mitte Schumannstr. 21/22 D-10117 Berlin Germany phone: +49-30-28460-119 fax: +49-30-28460-507 email: pleissner at mpiib-berlin.mpg.de

Dear all, I am a happy user of R console, but I would like to see syntax coloring. I use R 2.12 in Ubuntu Linux. I have found the packages "xterm256" and "highlight", but I was not able to figure out how to use it to highlight the syntax in console output. Also, I tried several GUI interfaces, but I was not able to find something that suits me better than the default R

Hi everyone, I'm experiencing difficulty getting the results I want when I use a nested for loop. I have a data set to which I perform some calculations, and then try to apply a regression over a rolling window. The code runs, but the regression results I am getting (intercept and slope) are simply the same, repeated again and again in the results matrix. The regression does not seem to be

Dear R users,I have a long program that I am trying to run--I am using RStudio as my interface with R. The pieces of the program run well individually but when I try to run everything in sequence it bogs down because of a warning after using rollmax from package zoo. Here is the warning: "In rollmax.zoo(zoo(Pmat), 7, na.pad = FALSE, align = "right") : na.pad is deprecated. Use

Thanks Jeff, I attached a file with the program to my earlier email because the posting guide seemed to imply that non-binary attachments would work. But I see that the file was stripped off. I installed the program file on a web site, but when I downloaded it, the line breaks were stripped out. So I've included the program below: ------------------------------------------------------- #

Thank you for your replies so far. Sorry for bothering you again, but I'm still not able to get what I need as I don't understand all parts of the replies (just using R for easy things....). Is there a code for plane3d() like some of you sent me for points3d()? I was not able to get that out of the scatterplot3d package... What I can do is to get the x,y and z-range for the xlim,ylim and

Hello R-help! I am trying to draw series of lines in 3d, and I am not sure how to get the depth set up properly - lines that are in front of other lines appear to be behind and vice versa. I've been doing this by first generating an empty persp plot, then adding lines via the data into trans3d followed by lines (this is probably a bad approach, but it was the first one I could get working).

I have successfully fitted the model loess.fit1 <- loess(response ~ X*Y) and plotted it in 3D using X.grid <- seq(0,10,length=100) Y.grid <- seq(0,1000,length=100) pred.loess1 <- predict(loess.fit1, expand.grid(x = X.grid, y = Y.grid)) persp(X.grid, Y.grid, pred.loess1, theta = 0, phi = 12) I would like to add a series of points along the fitted surface at X.grid =

Hi, I experience surprisingly large timing differences for the multiplication of matrices of the same dimension. An example is given below. How can this be explained? I posted the question on Stackoverflow: https://stackoverflow.com/questions/58886111/r-why-is-matrix-product-slower-when-matrix-has-very-small-values Somebody could reproduce the behavior but I did not get any useful explanations

Hello list. I very often need 3d scatterplots, and use scatterplot3D quite a lot. I am trying to modify persp() to plot scatterplots, and make use of the theta and phi arguments that persp() offers. I am having some difficulty passing the correct arguments to persp(). Here is my function so far. Much of it is copied from the persp() manpage. points3d <- function(x,y,z,

Hello list. I very often need 3d scatterplots, and use scatterplot3D quite a lot. I am trying to modify persp() to plot scatterplots, and make use of the theta and phi arguments that persp() offers. I am having some difficulty passing the correct arguments to persp(). Here is my function so far. Much of it is copied from the persp() manpage. points3d <- function(x,y,z,

Hello, Is it possible to draw level lines on the surface of a bivariate function? In the following example, to draw surface and levels lines for a multivariate normal law, I use persp, trans3d, contourLines and lines, but if the lines are correctly drawn, some parts of them are, of course, visible even if they are drawn on a non visible "face". Any suggestion to avoid this problem

Hi January, I believe the root of the xlsx issue has been identified and a fix suggested by Tomas Kalibera (see https://github.com/s-u/rJava/pull/102). In a nutshell, Oracle Java on Linux modifies the stack in a way that makes it smaller and and the same time makes it impossible for R to detect this change, leading to segfaults. It is not clear to me that the same problem would occur on Mac,

Dear all, I just stumbled upon some behavior of the == operator which is at least somewhat inconsistent. R version 3.6.1 (2019-07-05) -- "Action of the Toes" Copyright (C) 2019 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 (64-bit) > list(a=1:3, b=LETTERS[1:3]) == NULL logical(0) > matrix(1:6, 2,3) == NULL logical(0) > data.frame(a=1:3,

You asked the same question on the Bioconductor mailing list back in August. At that time, you suggested yourself a solution for how the adjusted p-values should be interpreted. I answered your query and told you that your interpretation was correct. So I'm not sure what more can be said, except that you should read the article Wright (1992), which is cited in the help entry for p.adjust(),