similar to: Pairwise T-Tests and Dunnett's Test (possibly using multcomp)

Hello Everyone,   Below is my first attempt at R programming. The code replicates example 5.1 from Common Statistical Methods for Clinical Research with SAS Examples. I was hoping that people more experienced than myself would be willing to take a look and let me know what I did well and what could have been done better. I'd be particularly grateful if anyone could tell me why the two user

Dear List, Could you tell why I get the error message? > library(multcomp) > data("cholesterol") > m = aov(response ~ trt, data = cholesterol) > cht <- glht(m, linfct = mcp(trt = "Tukey")) Error: could not find function "glht" Thank you G?bor

Dear all, I was trying to understand how "multcomp" package works by running the examples given in the documentation. However I still don't understand when it comes to multiple comparison set by user (please refer to "Ksub" in the code). Therefore I run 2 other cases along with the original example (case 1), with the expectation I'll get the point from the output. The

Hi, I want to retrieve a value in the Dunnett's tables. I know the comparisons type, the percent of level,the number of traitments and the degrees of freedom. Is there a function to retrieve this value with this? Laurent Houdusse Analyste Programmeur

Hi, I've got this model and following Hothorn et al advices, I used glht for a post hoc comparison > modezqM<-glm(rojos~estacion*zona3,quasipoisson,subset=(edadysexo=="M")) > anova(modezqM,test="F") Df Deviance Resid. Df Resid. Dev F Pr(>F) NULL 293 41148

Hi All, I am trying use 'multcomp' for multiple comparisons after my ANOVA analysis. I have used the following code to do ANOVA: dat <- matrix(rnorm(45), nrow=5, ncol=9) f <- gl(3,3,9, label=c("C", "Tl", "T2")) aof <- function(x) { m <- data.frame(f, x); aov(x ~ f, m) } amod <- apply(dat,1,aof) Now, how can I use

Hi! I use simtest fonction of multcomp package to compile a Dunnett's test. I have 10 treatments and one control group, so i create a matrix with: m<-matrix(0,10,11) m[1,1]<--1 m[1,2]<-1 m[2,1]<--1 m[2,3]<-1 m[3,1]<--1 m[3,4]<-1 m[4,1]<--1 m[4,5]<-1 m[5,1]<--1 m[5,6]<-1 m[6,1]<--1 m[6,7]<-1 m[7,1]<--1 m[7,8]<-1 m[8,1]<--1 m[8,9]<-1

I'm having some problems I don't quite understand adding a samba4 member to a samba4 domain. The member joins without problems, but no one can login. I'm guessing it might be an idmap problem (well, see below for more details) - the login server is several times updated, and started using alpha16 I think, but does not have any idmap backend configuration at all... Could I add that,

Hi, I've got a data set with a control group and a number of experimental groups, that have unequal sample sizes, and am measuring the number of people in each that respond yes or no. I'd like to use a dunnett test in R, where the syntax is supposed to be like: library(multcomp) test.dunnett=glht(anova_results,linfct=mcp(method="Dunnett")) confint(test.dunnett)

Hello all, I would like to do a Dunnett test in glht(). However, the factor level I want to use as the control is not the first. dunn1<-glht(model3, linfct = mcp(Container = "Dunnett"), alternative = "less") The factor container has 8 levels, so it would be nice not to manually enter in all of the contrasts. I originally discovered glht() when working with a glm model

HI ALL: I can not compile MFC successfully due to the resource file 'afxres.rc'. Can you give some suggestions to solve this problem or share your experience on compiling MFC? Thank you. version of OS: [ken@Linux80 mfc]$ uname -a Linux Linux80 2.4.18-14 #1 Wed Sep 4 12:13:11 EDT 2002 i686 athlon i386 GNU/Linux version of MFC source is the MFC version released with VC 6.0 I compiled it

I have Samba PDC and use tdbsam backend. I use the version 3.0.11, but recently I have exchanged it for the version 3.0.23c. Now I have a number of problem. Here is one of then. I wish to move one user "gad" from Domain Users (RID 513) to Domain Guests (RID 514). Now Primary group of user "gad" is "Domain Users": pdbedit -Lv gad -d0 Unix username: gad NT

# Your mailer is set to "none" (default on Windows), # hence we cannot send the bug report directly from R. # Please copy the bug report (after finishing it) to # your favorite email program and send it to # # r-bugs@r-project.org # ###################################################### The multcomp functions work on "lm" objects as anticipated. They do not work on

On 8/3/07 22:12, "Gad Abraham" <g.abraham at ms.unimelb.edu.au> wrote: > Laura Hill wrote: >> >> >> On 7/3/07 00:15, "Gad Abraham" <g.abraham at ms.unimelb.edu.au> wrote: >> >>>> On 6 Mar 2007, at 08:54, Laura Hill wrote: >>>> >>>>> Hi, >>>>> >>>>> My name is

I am running a linear model with achiev as the outcome and major as my iv (5 levels). The lm statement runs fine, but for the glht command I get the following error. I noted that someone else asked the same question a while back but received no reply. I am hoping someone might know what is happening. anovaf2<-lm(achiev ~ major, data=data_mcp) > pairwise<- glht(anovaf2,linfct =

Hi, all: Two examples are shown below. I want to use the multiple comparison of Dunnett. It succeeded in upper case "example 1". However, the lower case "example 2" went wrong. In "example 2", the function pmvt return NaN, so I cannot show this simtest result. Is there any solution? (I changed the variable "maxpts" to a large number in front of the

Dear R community I currently try to get post hoc multiple comparisons with the package multcomp from a cox mixed-effects model, where the survival is explained by two variables (cover with levels: nocover and cover; treatment with levels: tx, uv, meta), whose interaction is significant. I read Hothorn, T. 2011: Additional multcomp Examples and there is an example involving a two-way ANOVA with

I am trying to use multcomp to do a Tukey posthoc on growth increments among genetic crosstypes. #Fixed effect model m1 <- lm(inc ~ 0 + Age+ Crosstype + Sex, data = Data.age) summary(m1) RESULTS of the model: summary(m1) Call: lm(formula = inc ~ 0 + Age + Crosstype + Sex, data = Data.age) Residuals: Min 1Q Median 3Q Max -0.87180 -0.34002 -0.02702 0.27710 2.17820

V??en? z?kazn?ku, tak jak st?rneme, kles? na?e pohlavn? potence. N?? organizmus produkuje m?n? testosteronu, co? je v?znamn? hormon mu??, a proto je i na?e touha men?? a v?kon slab??. Pro mnoho mu?? to znamen? v??n? pohlavn? probl?my - slab? nebo neexistuj?c? stopo?en?, ztr?ta mu?nosti nebo schopnosti uspokojen?. Jsou to trapn?, poni?uj?c? v?ci. Samoz?ejm? na to existuj? l?ky na l?ka?sk? p?edpis,

Hi, Can anyone explain how the standard error in arima() is calculated? Also, how can I extract it from the Arima object? I don't see it in there. > x <- rnorm(1000) > a <- arima(x, order = c(4, 0, 0)) > a Call: arima(x = x, order = c(4, 0, 0)) Coefficients: ar1 ar2 ar3 ar4 intercept -0.0451 0.0448 0.0139 -0.0688 0.0010 s.e.