similar to: color2D.maplot fixed color range

Dear all I am using color2D.maplot to map some matrixes to plot. everything works fine. It seems that when my matrix contains only the same value color2D.maplot returns the following error: color2D.matplot(estimatedsr,redrange=c(0,1),greenrange=c(0,.5),bluerange=c(0,.5),xlab="x",ylab="y",main=sprintf('Estimated'),show.legend=TRUE,show.values=TRUE) Error in rgb(reds,

Hi all. I am having a problem using color2D.matplot I am trying to visualize several different matrices under two color ranges. One color range corresponds to values less than 1 and the second color range for values greater than 1. However, the minimum value of each matrix differs and is automatically set to have the smallest value in the color range. Similarly, the maximum value of each matrix

Hi Does anyone know how to set the titles in MAplots to just show the CEL file name? So far I have; #define 'Array' as object containing CEL names Array <- col.names(Data) #open bmp and make a separate bmp for each MAplot bmp("C:/MAplot%03d.bmp") #remove the annotation and minimise margins par(ann=FALSE) par(mar=c(1,1,1,1)) #MAplot MAplot(Data...???? Does anyone know the

I am using color2D.matplot to plot a matrix about 400 by 200. The values in the matrix are 0:5 and NA. The resulting plot is not color, but shaded b/w. I tried to figure out how to add colors, I would like something like c(blue, green, red, cyan, green) #example motifx <- matrix(NA, nrow=100,ncol=20) motifx[,1:5] <- 1 motifx[,6:10] <- 2 motifx[,11:15] <- 3 motifx[,15:19] <- 4

Hi, I finally came up with a nice colored matrixplot, using the color2D.matplot function of the plotrix package. But I can't assign xtics and ytics to this plot. I made sure that the matrix has correct colnames() and rownames(). Here's what I do: a=matrix(1:16, 4, 4) colnames(a) <- c("X1", "X2", "X3", X4) rownames(a) <- c("Y1",

I am a true R novice aonly using it for this function ;) I am trying to use color2D.matplot to form a image of my data using the following conditions color2D.matplot(fi1, c(dr), c(dg), c(db), nslices=7, ylab='Species', xlab="gene", show.legend=TRUE) where fi1 is my matrix. I have a matrix with 36 columns and 130 rows. most entries are 1 or 0 and I am trying to get this

Hello, everyone. I am trying to show the correlation matrix using color2D.matplot(). And I want to map (0,1) to (dark red to dark green). But by default color2D.matplot() will map(min element of given matrix, max element of given matrix) to (dark red to dark green). Can anyone help me with this issue? Thanks a lot! Youcheng Lin ____________ [[alternative HTML version deleted]]

Hi, I am trying to plot a large matrix by using color2D.matplot. A substantial part of the matrix has no data (NAs). However, when trying to plot it, I get an error. It is only when I change all NAs to zeros that it works, but that in some way introduces 'wrong' data. Is there any workaround this? Thank you in advance!!! Bernardo -- View this message in context:

Hi, I am using color2D.matplot (...) function of "plotrix" package. I used a matrix of size around 20*20 However, apparently it failed to visualize the matrix and gave the following exception, which I don't have any idea about possible source of this error. "Error in plot.new() : figure margins too large" It would be appreciated if someone points me to the right origin

Hello all, I have what i feel is a unique situation which may not be resolved with this inquiry. I have constructed the below data set so that i may give an example of what im doing. The example works perfectly and i have no issues with it. My problem arises with my actual data, which includes another 11 columns of data (used in later analysis) and a total of about 7000 cases(rows). i

Hi there, I'm attempting to use color2D.matplot(x,cellcolors=cellcol, do.hex=TRUE) from the plotrix package, but do not want to have borders around the hexagons. I've tried various approaches such as fg="white", col="white", lty=0, lwd=0 and border=NULL/FALSE/"white", but none of them works. I'd appreciate any ideas. Thanks, John -- GMX Kostenlose

For the following: Bldgid<-c(1000,1000,1000,1001,1002,1003,1003,1003) Maplot<-c(20000,20001,20002,30000,30001,40000,40001,40002) Area<-c(40,170,160,50,100,100,90,110) #Construct Sample dataframe MultiLotBldgs..<-data.frame(Bldgid,Maplot,Area) CondoLots_ <- tapply(MultiLotBldgs..$Maplot, MultiLotBldgs..$Bldgid, length) CondoLots_ Returns: 1000 1001 1002 1003 3 1 1

So I've got a 154 column wide xts time series object and I want to plot the 154 series on a single plot and have the added benefit of the time series dates on the x axis. Any suggestions for plotting functions, maplot works but does not give dates on the axis and I can't seem to get plot to give me more than one series. Nick [[alternative HTML version deleted]]

Dear all when I call color.scale like this: require('plotrix') colcolor<-color.scale(c(range_sr,sr),extremes=c("red","blue")) Error in if (min(reds) < 0 || max(reds) > 1) reds <- rescale(reds, c(0, : missing value where TRUE/FALSE needed range_sr [1] -10.00000000000000 44.02977813958366 str(sr) num [1:100, 1:100] 2.54 2.71 2.89 2.95 3.03 ...

Dear all I have an sprintf inside a loop to track changes in variable's value. This sprintf statement works if I copy and paste it inside R sprintf('I did the the %d,%d \n',k,l) but when this is inside a loop I get no message. listcounter<-1 for (k in c(1:mmax)){ # for (l in c(1:nmax)){ lst[[listcounter]] <-fun(estimatedsr) listcounter<-listcounter+1

Dear All, Please see the code snippet at the end of the email. I am using the color2D.matplot in Plotrix to plot a matrix. It works great, but there are a few things I cannot figure out (1) the value of cex.axis in the code snippet does not seem to affect the final pdf at all (at least on my system, Ubuntu 9.10, plotrix and Cairo installed from cran). How do I specify the size of the axis ticks

Dear All, I am using the plotrix library to plot some matrices. I have a problem: some of my data are outliers, hence using a linear color scale does not work very well (you would see too many cells having a similar, indistinguishable color). See the code snipped at the end of the email. Plotting the logarithm of the data gets the job done, but my problem is that I would like to write in every

Hi all, I have a x, y matrix of numbers (usually ranging from 0 to 40). I need to group these numbers and assign a color to each group (for example 0 to 15 - Blue, 16-30- Yellow, and 31-40- Red). Then I need to draw a rectangular matrix which contains X x Y boxes and each box has the corresponding value from the input matrix and is also colored according to which group (i.e red, yellow,

Hi, I apologise in advance for the na?ve question. I have large matrices that I want to plot. I currently use color2D.matplot. However, these matrices contain many values of no interest (i.e. where there is no data, the figure -999 is automatically displayed). Is there any way of removing these from the matrices to be plotted by matplot? An obvious possibility is setting them all to 0, but that

Hi- I am trying to plot a matrix of categorical values across time using color to represent each individual factor. For example: 1982 1983 1984 1985 1986 1987 1 19 19 68 68 19 19 68 2 68 68 19 19 68 68 19 3 26 26 34 34 26 26 26 4 57 34 57 57 34 57 34 5 34 57 26 26 57 34 57 6 28 28 28 28 28 58