similar to: read in data, maintain decimal places

Hello people I am doing some thinking about how to analyse data on dimorphic animals - where different individuals of the same species have rather different morphology. An example of this is that some male beetles have large horns and small wings, and rely on beating the other guys up to get access to mates, whereas others have smaller horns and larger wings, and rely on mobility to

Hello! I have a data frame mysample (sorry for a long way of creating it below - but I need it in this form, and it works). I regress Y onto X1 through X11 - first without weights, then with weights: regtest1<-lm(Y~., data=mysample[-13])) regtest2<-lm(Y~., data=mysample[-13]),weights=mysample$weight) summary(regtest1) summary(regtest2) Then I calculate Durbin-Watson for both regressions

Dear R users I recently migrated from Statistica/SigmaPlot (Windows) to R (Linux), so please excuse if this may sound 'basic'. When running a nonlinear regression (V = Vmax * conc / (Ks + conc), i.e. Michaelis-Menten) on SigmaPlot, I get the output listed below: >>>Begin SigmaPlot Output<<< R = 0.94860969 Rsqr = 0.89986035 Adj Rsqr = 0.89458984 Standard Error of

I am running a logistic regression model with a random effect using lmer. I am uncertain how to check for collinearity between my parameters. I have already run cor() and linear regression for each combination of parameters, and all Rsqr values were <0.8….but I am analyzing ecological data so a 0.8 cutoff may be unrealistic. -is there a way to check variance inflation factors or tolerance

Hello, I've got a matrix consisting of one column with n rows. Each field in the matrix is filled with a character vector. I would like to convert this matrix into a character vector containing the B03_MAH-type entries from the beginning of each row and a data.frame that contains the numeric data, but I am stuck. I have tried to use textConnection with sep = " " but since

Dear R Users, I am looking for an alternative to AIC or BIC to choose model parameters. This is somewhat of a general statistics question, but I ask it in this forum as I am looking for a R solution. Suppose I have one dependent variable, y, and two independent variables, x1 an x2. I can perform three regressions: reg1: y~x1 reg2: y~x2 reg3: y~x1+x2 The AIC of reg1 is 2000, reg2 is

Hi all, I was trying to plot a graph using the following data: method percent accuracy group A1 4 0.8529 cns A1 10 0.8412 cns A1 15 0.8235 cns A2 4 0.9353 cns A2 10 0.9412 cns A2 15 0.9471 cns A1 4 0.8323 col A1 10 0.8452 col A1 15 0.8484 col A2 4 0.8839 col A2 10 0.8677 col A2 15 0.8678 col ################# The code I'm using to generate the graphs is: ### code :

As I am reading ?arima, only NA entries in the argument fixed= imports. The following seems to indicate otherwise: x <- arima.sim(model=list(ar=0.8), n=100) + (1:100)/50 > t <- 1:100 > mod1 <- lm(x ~ t) > > init1 <- c(0, coef(mod1)[2]) > fixed1 <- c(as.numeric(NA), 0) > > arima(x, order=c(1,0,0), xreg=t, include.mean=FALSE, init=init1, fixed=fixed1)

Hello, I would like to do a partial least square discriminant analysis (PLSDA) in R using the package "ropls" Which is in R available via the R command : source("https://bioconductor.org/biocLite.R") I try to do a PLSDA to illustrate the impact of two genders (AP,C) on 5 compounds measured in persons (samples) should be illustrated. When I try to do a PLSDA I get the warning

Using the small reproducible example below, I'd like to know if one can somehow use the matrix "sig" (defined below) to add a black outline (with lwd=2) to all pixels with a corresponding value of 1 in the matrix 'sig'? So for example, in the ggplot2 plot below, the pixel located at [1,3] would be outlined by a black square since the value at sig[1,3] == 1. This is my first

Dear R-Helpers, I want to compare the results of outputs from glmmPQL and lmer analyses. I could do this if I could extract the coefficients and standard errors from the summaries of the lmer models. This is easy to do for the glmmPQL summaries, using > glmm.fit <- try(glmmPQL(score ~ x*type, random = ~ 1 | subject, data = df, family = binomial), TRUE) > summary(glmmPQL.fit)$tTable

Hi dear sirs, I am wondering why the fit of the time serie x with an arima and the fit of diff(x) with an arma (same coeff p & d) differ one from another here are the output of R: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% > modelarma<-arma(diff(x),c(7,5)) > modelarma Call: arma(x = diff(x), order = c(7, 5)) Coefficient(s): ar1 ar2 ar3 ar4 ar5 ar6 ar7 ma1 ma2 0.06078

Hi, I have a matrix with few hundred by a few hundred and want to extract rows, e.g. (0,1,0), or (1.3, 2.4, 4). I made an example: > A = rep(rep(c(0,1),4),2) > B = rep(rep(c(0,1),each=4),2) > C = rep(rep(rep(c(0,1),2),each=2),2) > X = data.frame(A,B,C,rnorm(16)) A B C [1,] 0 0 0 0.72767870 [2,] 1 0 0 -0.09673298 [3,] 0 0 1 0.51192790 [4,] 1 0 1 -1.54350441 [5,] 0 1 0

Hi Fellows from R-Help List! My questions are basic since i an new with R. I am very acquainted with Matlab & Gauss (the compentence, I guess). Anyhow, (1) I am trying to get R execute comands made or built as text, so that one can feed a particular option with many variations coming from a text file. Is this possible with the free version? For instance, there exists the eval comand in

Hi I am using Xapian 1.012 here, trying to optimise the search preformance. My testing suit has 10M docs of forum threads, DB only indexed the thread title, author name, category name, and 1 optional serialize value(0) which is the unix dateline DB_full indexed all the DB terms + thread contents After couple tests, I decided to remove ALL anchor terms such as SHOW_PUBLIC, MORE_IMPORTANT

Hi everyone! #I need a loop or a function that creates a X2 variable that is X1 without the extreme values (or X1 winsorized) by industry and year. #My reproducible example: firm<-sort(rep(1:1000,10),decreasing=F) year<-rep(1998:2007,1000) industry<-rep(c(rep(1,10),rep(2,10),rep(3,10),rep(4,10),rep(5,10),rep(6,10),rep(7,10),rep(8,10),rep(9,10), rep(10,10)),1000) X1<-rnorm(10000)

Hello, I would like to do a partial least square discriminant analysis (PLSDA) in R using the package "ropls" Which is in R available via the R command : source("https://bioconductor.org/biocLite.R") When I try to do a PLSDA using my own data. The impact of two genders (AP,C) on 5 compounds measured in persons (samples) should be illustrated. When I try to do a PLSDA I get

I had found the author's (Wolfgang Viechtbauer) earlier meta-analytic code in R, MiMa, useful. so I have been exploring metafor using an example dataset from MiMa. metafor provides a lot more. However, MiMa provided parameter estimates, standard errors, z values, etc. for individual moderators in the meta-analysis, but I don't see how to obtain these from metafor. Have you any help

Hi Eric, you can use an annotate-layer, eg ind<-which(sig>0,arr.ind = T) ggplot(m1.melted, aes(x = Month, y = Site, fill = Concentration), autoscale = FALSE, zmin = -1 * zmax1, zmax = zmax1) + geom_tile() + coord_equal() + scale_fill_gradient2(low = "darkred", mid = "white", high = "darkblue",

Are these 225 compile time regressions real? It sure looks bad! Ciao, Duncan. On 01/12/11 09:39, llvm-testresults at cs.uiuc.edu wrote: > > bwilson__llvm-gcc_PROD__i386 nightly tester results > > URL http://llvm.org/perf/db_default/simple/nts/380/ > Nickname bwilson__llvm-gcc_PROD__i386:4 > Name curlew.apple.com > > Run ID Order Start Time End Time > Current 380