similar to: Heat map in R

Hello, I must start by saying that I am an R novice and am sorry if this is a no-brainer... I have an csv file that contains a grid of 300x300 data points. Each point represents a 1Km square on a map. Each point is either a floating point number or NA. I load the data in with:   data <- read.csv("matrix.csv", sep=',') Convert the data to a matrix with:   data_matrix <-

Hi, I am using the package PTAK and in particular the command Candpara to perform the Parafac factorizationor of a tensor. The results are not encouraging as I expected, I'm starting a phase of analysis to see if there are errors. I pose a question and I hope you can help me. The command to run the factorization is: ## CANDECOMP/PARAFAC results<- CANDPARA(data_matrix, dim=3)

Hello, I have a large data set from RNA sequencing and I am trying to make a heat map of my data. I have am having issues formatting my heat map figure. My data set is large with the log2 fold change for over 6oo genes across 4 treatments. My csv file is formatted as such: Gene Drought Ozone Temp1 Temp2 Glyma0041s00260

Hi, #make example data dat <- data.frame(matrix(rnorm(15),ncol=5)) colnames(dat) <- c("ab","cd","ef","gh","ij") If I want to get a subset of the data for the middle 3 columns, and I know the names of the start column and the end column, I can do this: mysub <- subset(dat,select=c(cd:gh)) If I wanted to do this just on the column names,

I am trying to calculate monthly means by year of phosphates and nitrates from a multi year data set. Can anybody help me out with the most effective way to do this? My data looks like this: Collection_Date                   Test.Name              Value 2000-01-24 17:00:00            Phosphate               0.108 2000-01-24 17:00:00            Nitrate                     0.037 2001-11-12

Dear list, I have imported a spss data file in R, where a comma is used to separate the decimal numbers, e.g. 3,567 instead of 3.567 as in R. How can I replace the comma with a dot for all values in the data frame >kk a b c d e f 1 ,0925199910320613 82523 8 ,855 ,803 ,69 2 ,278314161923372 91657 26 1,285 1,032 ,823 3

Hi, all I didn't get any response from swig for my question. see if I can get some help here Thanks ---------- Forwarded message ---------- From: charlie <charlie.xia.fdu@gmail.com> Date: Tue, Nov 4, 2008 at 1:55 PM Subject: SWIG with R and C++ STL To: swig-user@lists.sourceforge.net Hi all, I am new to SWIG. I encountered some problem when I try to SWIG to R some C++ modules. Here

Dear Forum, I have a data frame as  mydat = data.frame(basel_asset_class = c(2, 8, 8 ,8), defa_frequency = c(0.15, 0.07, 0.03, 0.001)) > mydat   basel_asset_class defa_frequency 1                 2          0.150 2                 8          0.070 3                 8          0.030 4                 8          0.001 I need to get the subset of this data.frame where no of records for the

Dear Forum, I have a data frame as  mydat = data.frame(basel_asset_class = c(2, 8, 8 ,8), defa_frequency = c(0.15, 0.07, 0.03, 0.001)) > mydat   basel_asset_class defa_frequency 1                 2          0.150 2                 8          0.070 3                 8          0.030 4                 8          0.001 I need to get the subset of this data.frame where no of records for the

I just joined the list and appologize if this has been answered before but I am trying to interface between R and the Compaq Visual Fortran compiler version 6.6 for Windows. I found the following instructions on the web -- and an example. When I follow these directions exactly. R 2.0.0 crashes. Has anyone had any experience with this? Below are the instructions that I located: Thanks Dan

I have been using Ruby on Rails for around 6 weeks now (so far I love it), but I''ve gotten to a point in the application where I need to allow the user to upload comma deliminated text files that will get loaded into one of the database tables. Before I get started doing this, I was wondering anyone knows of any examples or tutorials that deal with this. I''d rather do it

While setting up sieve on my email server I mistakenly setup a symlink (~/sieve/myfilter.svbin > ~/.dovecot.sieve) but I think that that should have been (~/sieve/myfilter.sieve > ~/.dovecot.sieve). I have fixed the mistake but dovecot/sieve still throws an error saying that the symlink still links to the wrong file. I have made sure the symlink is fixed (it links to

Sorry to keep asking elementary questions......I appreciate the help. I am trying to create a dotchart with the rows sorted according to the values, rather than the labels. When I try prof <- c('Accountant', 'Administrative assistant', 'Garment worker', 'Cook', 'Dentist', 'General practictioner', 'Graduate student', 'High level

-----BEGIN PGP SIGNED MESSAGE----- Hash: SHA1 Hi list Can you please say me what this output exactly mean? Anything in relation to fans/cooling? What does "active" and "ok" mean? Which values are healthy? # acpi -tBSc Thermal 1: active[3], 50.0 degrees C Thermal 2: ok, 47.0 degrees C Thermal 3: ok, 45.0 degrees C Thermal 4: ok, 28.0 degrees C Thermal

Hi, I use heatmap.2 and heat.colors. Is it possible to specify the colors in that way that all values below, for instance, 1.5 should be coloured red, values between 1.5 and 1.7 green and above 1.7 black? Many thanks -- View this message in context: http://r.789695.n4.nabble.com/specify-heat-colors-tp2300139p2300139.html Sent from the R help mailing list archive at Nabble.com.

Dear All, I would like to do the following: make a plot of the world and color a few selected states. Some states have an associated scalar (i.e a simple number) and I would like to paint them using a heat map and show legend for the color map in the plot. One or two states do not have any number associated to them and are simply colored/filled according to a distinctive pattern that I choose. To

Anyone notice that their IAXy gets quite warm when you're on a call, a little warm on idle? How warm does it get when say two or three people are on two or three phones on a call? Anyone thought of making an aluminum case for it?

Hi all, I am trying to produce a heatmap to display clustering of similar rows in the data given below. For each given row, different colors are used to represent the corresponding column value. I want to display the values of the colors in the form of a color key added to the heatmap. Is there anyway of doing this? > z[1:10,1:6] [,1] [,2] [,3] [,4] [,5] [,6] [1,]

Hello all, I am trying to cluster similar rows of a data matrix together using hierarchical clustering and display the results in the form of a heat map. In a Heat map, is it possible to get the order in which the rows will be clustered , starting with the first rows joined into a group and then followed by other groups added. I thought i could extract the order by using $rowInd, but looks like

Hi, I have spatial data for plants that I would like to plot according to its radius using sysmbols(). Also I would like to color the circles according to an individual's age using heat.colors(17) [ages within the whole data set range from 0:16]. I have not found an easy way to assign ages (=a) a specific heat.color. Any suggestions? Thanks, Patrick x <- c(1,3,4,6,7,3,2,8,3,6,5,5) y