similar to: Problem loading Tcl/Tk (?)

Dear r-helpers, I'm running Version 2.3.0 (2006-04-24) under OS X 10.4.6. (1) When I start R from the terminal, it has no complaints. (2) When I start R.app using R for Mac OS X Aqua GUI version 1.15 (3106) I get (I have increased the quote level of what is different from the output of the terminal): ... Loading required package: grDevices Loading required package: mvtnorm >

Hi, I am running a MacBook Pro with OS X 10.6.8. When I try to load library(cem) and run any function, R crashes. Any suggestions as to why this is? Thanks in advance. I think the problem is that I don't have all the "infrastructure" I need to run CEM, but I have no clue what to do either... #Do I have tcltk (I have no clue what that is) capabilities("tcltk") tcltk

(Short version:) Here is a temporary fix for a Xen build problem when using Python 2.4: cd xen-unstable/ sed -i ''s/--home/--prefix="" --home/'' tools/python/Makefile sed -i ''s/--home/--prefix="" --home/'' tools/pygrub/Makefile sed -i ''s/--home/--prefix="" --home/'' tools/security/Makefile (Long version:)

I would like to understand what may be needed/useful for the system NIC. My plan is to use an Asus mb, Sabertooth or Crosshair.  They both have a single on-board Ethernet port.  I am wondering about the possibility/need to have a 2-port plug-in NIC.  A scenario is to have a domU Windows or Linux SVN/Apache/PostgreSQL VM and interact with it through another domU Windows or Linus VM.  I also may

I can confirm the behaviour that you report.? Usually I put Rtools in c:\programs\Rtools and modify the path accordingly. Recently (don't recall for how long) I have encountered the same problems as you have and I have resorted to moving Rtools to c:\Rtools I have no idea as how to proceed; perhaps it could be worth trying an older version of Rtools (though that may cause other problems).

Hi all, a user contacted me about a segfault when installing WGCNA package dowloaded from CRAN. I also see a segfault like that on certain installs of R. The package passes all CRAN checks, so presumably this has something to do with the R installation or environment. The R versions here are not the newest but I would guess that this is not an R version issue. I'm attaching two

Hi all, I'm trying to set up the Windows Rtools toolset for building packages with compiled code. I installed for Windows R-3.4.3 from CRAN and installed Rtools-3.4 in a custom location M:\R\R-3.4.3 and M:\R\Rtools-3.4 Following the instructions, in shell, I set Path=M:\R\Rtools-3.4\bin;M:\R\Rtools-3.4\gcc-4.6.3\bin;M:\R\R-3.4.3\bin;... (the ... are other paths irrelevant for R/Rtools).

Hello: I have a new install of Ubuntu 12.04. I have tried to install R via source, apt-get, and the deb packages from a cran mirror. Each of these had issues. I followed the secure apt key install. The apt-get and deb installs each have the same error. So, let's ignore the source install for now. This is the error: >> sudo dpkg -i r-base-core_2.15.1-1precise2_i386.deb (Reading

First, please read WGCNA FAQ at https://labs.genetics.ucla.edu/horvath/CoexpressionNetwork/Rpackages/WGCNA/faq.html regarding using RNA-seq and other count data. Second, if you insist on using WGCNA on raw count data (which I don't recommend), use something like storage.mode(datExpr) = "double" and try again. Peter On Sun, Jul 9, 2017 at 2:29 AM, Ankush Sharma <ankush.sak at

Hello fellow R users, I am currently learning to use R, so please forgive me if there is an obvious explanation for the following problem. My goal is to perform WGCNA on a dataset of 19776 genes, so I opted to follow the block-wise network construction (Section 2c) in the WGCNA R Tutorial by Peter Langfelder and Steve Horvath. I ended up with 10 blocks and am able to plot the dendrograms and

Hello To update from R 2.6 to 2.8 (on Ubuntu 8.04 both) I had to install new tcl and liblapack packages (excuse me it is in french): > sudo apt-get install r-base-dev > Lecture des listes de paquets... Fait > Construction de l'arbre des d?pendances > Lecture des informations d'?tat... Fait > Les paquets suppl?mentaires suivants seront install?s : >

Hi all, I'm hoping someone more knowledgeable in Fortran than I can chime in with opinion. I'm the maintainer of the flashClust package that implements fast hierarchical clustering. The fortran code fails when the number of clustered objects is larger than about 46300. My guess is that this is because the code uses the following construct: IOFFSET=J+(I-1)*N-(I*(I+1))/2 where N is the

Hi, I'm running a tutorial ("Meta-analyses of data from two (or more) microarray data sets"), which use wgcna package. I have an error in the function modulePreservation (it is below). I'm using R2.13 Can you help me? Do you know, what is happens? Thanks Raquel multiExpr = list(A = list(data=t(badea)),B = list(data=t(mayo))) # two independent datasets (dim = 13447 x 36) mp =

Begin forwarded message: > From: Matthias Wahl <matthias.wahl at macnews.de> > Date: 28 giugno 2005 18:05:54 GMT+02:00 > To: stefano iacus <jago at mclink.it> > Subject: Re: [Rd] Does not run under Mac OS X 10.3.9 (PR#7975) > > > I don' have a folder 'Utilities' in applications, however here is > what I get when I chose > 'send error

Full_Name: Richard Zur Version: 2.1.0a OS: 10.3.9 Submission from: (NULL) (67.176.250.164) I erased R 2.0.1 (the R.app and the framework) and installed R 2.1.0a. I ran it once, then shut down without saving the workspace. Now it doesn't start at all. I've erased it a couple of times and re-installed (not installing the libraries I use, coda, MCMCpack, MASS and bayesm) but the same

Full_Name: Murray Pung Version: 1.9.0 OS: OSX Mac Submission from: (NULL) (134.148.20.33) Date/Time: 2004-06-05 12:32:30 +1000 OS Version: 10.3.4 (Build 7H63) Report Version: 2 Command: R.bin Path: /Library/Frameworks/R.framework/Resources/bin/R.bin Version: 1.9.0 (R 1.9.0) PID: 358 Thread: 0 Exception: EXC_BAD_ACCESS (0x0001) Codes: KERN_PROTECTION_FAILURE (0x0002) at

Hi all, I just installed R on my Mac OS X machine and wanted to installed tcl/tk. So, I installed tcl/tk from this page: http://cran.r-project.org/bin/macosx/tools/ It gets placed in /usr/local dir. and then I installed R. Next, in R, I set the TCL_LIBRARY variable by saying Sys.setenv(TCL_LIBRARY="/usr/local/lib/tcl8.5") and Sys.setenv(TK_LIBRARY="/usr/local/lib/tk8.5") But

Full_Name: Stephen Holland M.D. Version: 2.1.1 OS: Mac OS X Submission from: (NULL) (67.184.33.112) I did a bunch of stuff, then did in sequence: > state <- c("tas", "sa", "qld", "nsw", "nsw", "nt", "wa", "wa", + "qld", "vic", "nsw", "vic",

Hi, This seems to crash my version of R: "<TAB> where I type a double quote, and then hit the <TAB> key. I was playing with strsplit, and wanted to give it a vector of characters including newline, tab, space, and so on. I've included the trace info from my macBook Pro (intel macintosh). Date/Time: 2006-07-04 01:07:33.277 -0700 OS Version: 10.4.7 (Build 8J2135a)

Hi all, I maintain the WGCNA package which at present has nearly 200 functions. In the future there will be more. Curious whether it would be preferable or useful to split the package into a couple different ones with different aims. Obviously, when one calls a function in R, package name spaces have to be traversed to find the matching name - does the speed of this depend on how functions are