similar to: peak detection

Hi. First of all, excuse me if I do any mistakes, but English is not a language I use very often. I have a data frame with numbers. A small part of the data frame is this: nominal ordinal 2 2 2 1 2 1 2 2 So, I want to use the gower distance function on these numbers. Here (

I have 120 MS chromatograms containing two columns'Time' and 'Peak height'. how do in create a msSet file which is required by all the functions of 'msProcess' to process these files. I would appreciate help very much. Thanks Sharad -- View this message in context: http://r.789695.n4.nabble.com/msProcess-creating-msSet-file-s-tp3727959p3727959.html Sent from the R help

I'm in the process of converting some S3 methods to S4 methods. I have this function : setGeneric("enrichmentCalc", function(rs, organism, seqLen, ...){standardGeneric("enrichmentCalc")}) setMethod("enrichmentCalc", c("GenomeDataList", "BSgenome"), function(rs, organism, seqLen, ...) { ... ... ... })

Hello, I am trying to filter a data set like below so that the peaks in the Phase value are more obvious and can be identified by a peak finding function following the useful advise of Carl Witthoft. I have written the following for(i in length(data$Phase)){ newphase=if(abs(data$Phase[i+1]-data$Phase[i])>6){ data$Phase[i+1] }else{data$Phase[i] } } I get the following error which I have not

Hi, Lately my Latex engine used for checking packages stop working, and I can not figure out how to fix it. When creating my package (caMassClass) I get the * checking caMassClass-manual.tex ... ERROR LaTeX errors when creating DVI version. This typically indicates Rd problems. message. I look in caMassClass-manual.log file and find ! LaTeX Error: File `Rd.sty' not found.

I'd like to create a polar plot similar to those created by the polarFreq function in the openair package. However, this package seems to be specific to wind speed and direction, and requires a "ws" (wind speed) and a "wd" (wind direction) column. My data is unrelated to wind speed, but I'd like to be able to get a plot that does what polarFreq's plots do; I'd

I've been asked in private, (and am replying BCC to the asker), >> I saw your post on the R-help archives page about the possibility of >> porting a function from S-Plus called peaks() to R. I am looking for >> some way to locate peaks in a simple x,y data set, and thought that R >> might be the way to go. "of course" it is the way to go, don't get

Hi, I have the two vectors mean and sd of individual columns, but I am unsure how to generate bar charts with the standard deviation, even after looking the help of barplot and barplot.2. [[alternative HTML version deleted]]

I was not sure who I should contact about this, so I am posting this here. There are a few broken links on the R website. 1) http://www.r-project.org/search.html -> link to the Nabble R Forum. I belive the correct/new URL should be: http://r.789695.n4.nabble.com/ 2) http://www.r-project.org/other-docs.html -> link to "Auswertung ?kologischer Daten". Not sure if there is a new

Dear R Helpers Which package is available for estimatine the parameters of three parameter FRECHET distribution. Also, how to generate the random numbers for Frechet using these three estimated parameters. Thanking in advance Maithili

Hi, I am traying to implement an STAR model, but I have some problems. I am following the instruction of the model, that they are in: http://bm2.genes.nig.ac.jp/RGM2/R_current/library/tsDyn/man/star.html that they are from: http://bm2.genes.nig.ac.jp/RGM2/pkg.php?p=tsDyn The model is: star(x, m=2, noRegimes, d = 1, steps = d, series, rob = FALSE, mTh, thDelay, thVar, sig=0.05, trace=TRUE,

Hello I am currently working on forecasting hourly electricity prices where I am required to do wavelet transformation. First I need to calculate decomposition coefficients of the wavelet transform, then I need to select wavelet function using multiresolution technique. I would be really grateful if I can find any help in this matter. Thanking You with regards, -- Name : Tarun Trivedi Senior

How to adapt this piece of code but for: - gamma distribution - 3 parameter log normal More specifically, where can I find the specification of the parameter (lmom) for pelgam() and pelln3()? Lmom package info just gives: pelgam(lmom), lelln3(lmom), where lmom is a numeric vector containing the L-moments of the distribution or of a data sample. # Draw an L-moment ratio diagram and add a line for

Dear all I wonder if someone can explain what is the main difference between omega and alpha reliabilities? I understand an omega reliability is based on hierarchical factor model as shown in this graph<http://rgm2.lab.nig.ac.jp/RGM_results/psych:omega.graph/omega.graph_002_big.png>, and alpha uses average inter-item correlations. 1. What I don't understand is, in what condition,

Hi list, I am trying to calculate the sensitivity, specificity, and odds ratio(and confidence interval). Say, my data looks like this 42.53, 37.56, 40.51, 32.67, 38.19, 81.74, 41.55, 68.94, 59, 63, 54.13, 48.85, 50.46, 51.78 Is there any packages in R that does this? Espeically the odds ratio confidence interval. Mike [[alternative HTML version deleted]]

Dear All, I'm having trouble tweaking a forest plot made using the R meta-analysis package metafor. I did the analysis based upon the correlation coeff from studies and plotted the corresponding forest plot easily > q2<-rma(yi,vi,mods=cbind(grupo),data=qim) > q2 > forest (q2,transf=transf.ztor,digits=3, ... ,alim=c(0,1),refline=.5) > text(-1.55,42,"Esp?cie

Greetings of Peace! I am new in R software. I want to use the correlation dimension corrDim in computing a map. I have installed the packages(fractal) in R. Now my problem is this, when I tried your example in the following site http://rgm2.lab.nig.ac.jp/RGM2/func.php?rd_id=fractal:corrDim  > library(fractal) > png(filename="corrDim_%03d_med.png", width=480, height=480) >

Dear List, Following the link below ( http://rgm2.lab.nig.ac.jp/RGM2/func.php?rd_id=plotrix:clock24.plot) I got an interesting polar plots which displayed my data and the time of observation. Thank you very much for providing such details. However, I have two set of data which I wish to display in the same polar plot. I tried using points to add the second data but could not succeed. That is,

Hi, What is the function for inverse normal transformation? Thanks, Carol [[alternative HTML version deleted]]

Hi there, I hope to draw a plot like this: http://www.sg-chem.net/swizard/Ru-bqdi-spectra.gif is it possible to draw it using R? thanks for any suggestions. regards, Jinsong