similar to: New Installs, Same Trouble Loading doBy and coin Packages

Good Evening R-Help Community: I have attached a file that contains the output from sessionInfo() and a summary of my Win XP system. I am?running R 2.12.0 and using Tinn-R 2.3.6.2 as my interface. When I attempt to call either the doBy or coin packages R generates an error that I do not understand and have so far not been able to resolve by searching R resources. I exchanged a couple of

Hi, if i have data in the following time series format: time, amount, state 1 2222 A 1 333 B 2 45 A 2 77 B where states could be n and time periods t is there a package in R that would calculate the transition probabilities in a markov chain. for each t except t=0 to generate A B A B perhaps the best structure might

Hi all, I am trying to load the doBy package, and I am getting the following error: > library(doBy) Error in loadNamespace(i[[1L]], c(lib.loc, .libPaths())) : there is no package called 'Hmisc' Error: package/namespace load failed for 'doBy' I tried updating R to the current version (2.9.2) and installing the most recent version of the doBy package (4.0.2), and the error

I installed R 2.11.0, and I don't think I can load the doBy package now. Any suggestions? > library("doBy") Loading required package: survival Loading required package: splines Error in loadNamespace(i[[1L]], c(lib.loc, .libPaths())) : there is no package called 'Hmisc' Error: package/namespace load failed for 'doBy' > sessionInfo() R version 2.11.0

Dear Ruser's I want to substitute each "NA" by the group mean of which the "NA" is belonging to. For example, substitute the first record of traits "NA" by the mean of "BSPy01-10" in the dummy dataframe. I have ever tried to solve this problem by using doBy package. But, I failed. I ask for the advice on how to use "lapplyBy" function of

Greetings R Community, One of my favorite packages won't load and I'm not sure why. It loaded earlier today. The problem appears with the snow package, which doBy requires. I tried reinstalling both packages again ,shutting [R] down, reinstalling [R] in the workspace (shortcut). Here's the weird thing. The same exact library loads in another workspace using the same version of [R]

On Mon, Oct 30, 2017 at 10:56 AM Tony Schreiner <anthony.schreiner at bc.edu> wrote: > On Mon, Oct 30, 2017 at 10:27 AM, Larry Martell <larry.martell at gmail.com> > wrote: > > > I have a R script that I am running from python with rpy2. On a debian > > system I run this: > > > > apt-get install R-cran-ggplot2 R-cran-caret > > > > And the

Dear R helpers, I am trying to understand how to use the independence_test function in the coin package. I think I suffer from a misunderstanding about what the package does. Either that or I do not understand how to use it properly. Specifically, I cannot understand if I can test independence of arbitrary statistics. Take the following example: set.seed(10) d <- data.frame(y = c(rnorm(10,

I have a R script that I am running from python with rpy2. On a debian system I run this: apt-get install R-cran-ggplot2 R-cran-caret And the script works. I want to move this to CentOS 7 system. There it cannot find R-cran-ggplot2 or R-cran-caret. Does anyone know what packages in CentOS 7 I need for dplyr, doBy, and ggplot2?

Dear List, I'm interested in performing a permutation test on the interaction between a binary treatment indicator and a covariate (either continuous or categorical). I'm interested in the p-value of the interaction effect from a permutation test, and I'm using the coin package for that purpose. As I haven't seen any examples like this in the package documentation (or anywhere

Dear fellow R users, Keywords: Kruskal-Wallis, Post-Hoc, pair-wise comparisons, Nemenyi-Damico-Wolfe-Dunn test, coin package, oneway_test I am using the "oneway_test" function in the R package "coin" and I am obtaining results which I cannot believe are accurate. I do not wish to waste anyone's time and so if the following problem is rather trivial, I apologize, however I

Can someone recommend a method to answer the following type of question: Suppose I have a coin with a probability hhh of coming up heads (and 1-hhh of coming up tails) I plan on flipping the coin nnn times (for example, nnn = 500) What is the expected probability or frequency of a run of rrr heads* during the nnn=500 coin flips? Moreover, I would probably (excuse the pun) want the answer for a

Every time I try to install the doBy package I receive this error message: Warning in install.packages : error 1 in extracting from zip file Warning in install.packages : cannot open compressed file 'mvtnorm/DESCRIPTION', probable reason 'No such file or directory' Error in install.packages : cannot open the connection Has anyone run into this problem? Thanks, Jason --

Dear expeRts, I would like to use a oneway_test (from package coin) to test whether two groups differ on various variables. The variables are encoded within a data frame. Unfortunately, I obtained an error, that I don't understand. Could you please help me ? Example: library(coin) y <- as.data.frame(matrix(rnorm(200), ncol=2)) group <- as.factor(unif(100)) lapply(y,

Hi, R allows me to run a one sample Wilcoxon test like this: wilcox.test(c(1,3.5,2.1,4,1.5,5), mu=2, exact=TRUE) The function 'wilcoxsign_test' from the package 'coin' should (I suppose) be able to calculate exact p values even if there are ties in the ranks. However, I couldn't find information on how to run a one sample test using 'wilcoxsign_test' like in the

Hello, How can I fix this? I have the latest version of R 2.13.2 and I use Mac OS X 10.7.2 > library(doBy) Loading required package: lme4 Error in dyn.load(file, DLLpath = DLLpath, ...) : function 'cholmod_l_start' not provided by package 'Matrix' Error: package 'lme4' could not be loaded > library(lme4) Error in dyn.load(file, DLLpath = DLLpath, ...) : function

Given the following data, and hypothesized median M.0 I've found a method to implement the Wilcoxon signed-rank test. Data: (with one zero difference and tied ranks) x <- c(136, 103, 91, 122, 96, 145, 140, 138, 126, 120, 99, 125, 91,142, 119, 137) M.0 <- 119 > library(exactRankTests) Package ?exactRankTests? is no longer under development. Please consider using package ?coin?

I am trying a simple toin coss simulation, of say 200 coin tosses. The idea is to have a data frame like so: Experiment# Number_Of_Heads 1 104 2 96 3 101 So I do: d <-data.frame(exp_num=c(1,2,3)); /* Just 3 experiments to begin with */ d$head_ct <-sum(sample(0:1,200,repl=TRUE)); d; exp_num head_ct 1

Is it possible to implement the Jonckheere-Terpstra test for ordered alternatives using the coin package: Conditional Inference Procedures in a Permutation Test Framework? I found jonckheere.test{clinfun}, but it uses a normal approximation when ties are present in the data. To make this concrete, I've include a small dataset. Thanks. --Dale Hollander and Wolfe, 1999 Table 6.6, pg 205

Anyone know if coin can run a permutation test based on a (user-defined) statistic other than the mean difference? The function independence_test does the permutation t-test via difference in means. I'm wondering if it's possible to use independence_test to run a permutation test for some other statistic than the difference in means. For example, I'd like to run a permutation test