Displaying 20 results from an estimated 2000 matches similar to: "Trouble Loading doBy and coin Packages"
2010 Dec 10
1
New Installs, Same Trouble Loading doBy and coin Packages
I tried Tal's suggestion of deleting the doBy and coin packages and then
reinstalling them from a different mirror. The first install was from the
Harvard mirror and the second was from the Case Western Univ. mirror. The new
packages generate the same errors when I call them using the library() command.
Also, I tried to load these packages using R and its script editor thinking that
the
2010 Dec 11
0
is there a packge or code to generate markov chains in R
Hi,
if i have data in the following time series format:
time, amount, state
1 2222 A
1 333 B
2 45 A
2 77 B
where states could be n and time periods t is there a package in R that would calculate the transition probabilities in a markov chain.
for each t except t=0 to generate
A B
A
B
perhaps the best structure might
2009 Oct 06
2
Unable to load 'doBy' package
Hi all,
I am trying to load the doBy package, and I am getting the following error:
> library(doBy)
Error in loadNamespace(i[[1L]], c(lib.loc, .libPaths())) :
there is no package called 'Hmisc'
Error: package/namespace load failed for 'doBy'
I tried updating R to the current version (2.9.2) and installing the most
recent version of the doBy package (4.0.2), and the error
2010 Apr 23
1
doBy and Hmisc on R version 2.11.0
I installed R 2.11.0, and I don't think I can load the doBy package
now. Any suggestions?
> library("doBy")
Loading required package: survival
Loading required package: splines
Error in loadNamespace(i[[1L]], c(lib.loc, .libPaths())) :
there is no package called 'Hmisc'
Error: package/namespace load failed for 'doBy'
> sessionInfo()
R version 2.11.0
2009 Jun 09
1
how to use "lapplyBy" function of "doBy" package
Dear Ruser's
I want to substitute each "NA" by the group mean of which the "NA" is
belonging to. For example, substitute the first record of traits "NA" by the
mean of "BSPy01-10" in the dummy dataframe.
I have ever tried to solve this problem by using doBy package. But, I
failed. I ask for the advice on how to use "lapplyBy" function of
2011 Jun 29
1
library(doBy) will not load
Greetings R Community,
One of my favorite packages won't load and I'm not sure why. It loaded earlier today. The problem appears with the snow package, which doBy requires. I tried reinstalling both packages again ,shutting [R] down, reinstalling [R] in the workspace (shortcut). Here's the weird thing. The same exact library loads in another workspace using the same version of [R]
2017 Oct 30
2
R: dplyr, doBy, and ggplot2 in CentOS7
On Mon, Oct 30, 2017 at 10:56 AM Tony Schreiner <anthony.schreiner at bc.edu>
wrote:
> On Mon, Oct 30, 2017 at 10:27 AM, Larry Martell <larry.martell at gmail.com>
> wrote:
>
> > I have a R script that I am running from python with rpy2. On a debian
> > system I run this:
> >
> > apt-get install R-cran-ggplot2 R-cran-caret
> >
> > And the
2017 Oct 30
2
R: dplyr, doBy, and ggplot2 in CentOS7
I have a R script that I am running from python with rpy2. On a debian
system I run this:
apt-get install R-cran-ggplot2 R-cran-caret
And the script works. I want to move this to CentOS 7 system. There it
cannot find R-cran-ggplot2 or R-cran-caret. Does anyone know what
packages in CentOS 7 I need for dplyr, doBy, and ggplot2?
2011 Dec 09
1
Can not install doBy
Every time I try to install the doBy package I receive this error message:
Warning in install.packages :
error 1 in extracting from zip file
Warning in install.packages :
cannot open compressed file 'mvtnorm/DESCRIPTION', probable reason 'No
such file or directory'
Error in install.packages : cannot open the connection
Has anyone run into this problem?
Thanks,
Jason
--
2011 Oct 22
4
issue loading doBy library
Hello,
How can I fix this? I have the latest version of R 2.13.2 and I use Mac OS X 10.7.2
> library(doBy)
Loading required package: lme4
Error in dyn.load(file, DLLpath = DLLpath, ...) :
function 'cholmod_l_start' not provided by package 'Matrix'
Error: package 'lme4' could not be loaded
> library(lme4)
Error in dyn.load(file, DLLpath = DLLpath, ...) :
function
2017 Oct 30
0
R: dplyr, doBy, and ggplot2 in CentOS7
On Mon, Oct 30, 2017 at 10:27 AM, Larry Martell <larry.martell at gmail.com>
wrote:
> I have a R script that I am running from python with rpy2. On a debian
> system I run this:
>
> apt-get install R-cran-ggplot2 R-cran-caret
>
> And the script works. I want to move this to CentOS 7 system. There it
> cannot find R-cran-ggplot2 or R-cran-caret. Does anyone know what
2017 Oct 30
0
R: dplyr, doBy, and ggplot2 in CentOS7
You can install any R packages from CRAN using the ?"install.packages()"
command form within R itself. This will download, compile, and install the
packages into your personal user account. you might need to install some
supporting *-devel RPM packages via "yum", but otherwise, it should work.
---------------------------------------------------------------------------
Jason
2012 Nov 05
0
Diference in results from doBy::popMeans, multcomp::glht and contrast::contrast for a lme model
Hello R users,
I'm analyzing an experiment in a balanced incomplet block design (BIB). The
effect of blocks are assumed to be random, so I'm using nlme::lme for this.
I'm analysing another more complex experiments and I notice some diferences
from doBy::popMeans() compared multcomp::glht() and contrast::contrast().
In my example, glht() and contrast() were equal I suspect popMeans()
2009 Jun 09
4
how to substitute missing values (NAs) by the group means
Dear Ruser's
I ask for helps on how to substitute missing values (NAs) by mean of the
group it is belonging to.
my dummy dataframe is:
> df
group traits
1 BSPy01-10 NA
2 BSPy01-10 7.3
3 BSPy01-10 7.3
4 BSPy01-11 5.3
5 BSPy01-11 5.4
6 BSPy01-11 5.6
7 BSPy01-11 NA
8 BSPy01-11 NA
9 BSPy01-11 4.8
10 BSPy01-12 8.1
11 BSPy01-12 6.0
12
2011 Jan 03
1
Errors in installing Matrix package
Good Morning R-Help Community:
I cannot install the "Matrix" package on R (version 2.12.1). Here are the
errors:
> > Library(Matrix)
>
> Error in length(label) : could not find function ".extendsForS3"
> Error: package/namespace load failed for 'Matrix'
>
Any help would be appreciated.
Thanks,
Yingfeng
[[alternative HTML version deleted]]
2013 Jan 17
3
how to use "..."
Dear users,
I'm trying to learn how to use the "...".
I have written a function (simplified here) that uses doBy::summaryBy():
# 'dat' is a data.frame from which the aggregation is computed
# 'vec_cat' is a integer vector defining which columns of the data.frame
should be use on the right side of the formula
# 'stat_fun' is the function that will be run to
2009 Oct 01
2
Missing functions
Hi all,
I'm new to R and have been working hard to get familiarized with it. A
problem I'm facing now is that having installed some packages (psych, doBy),
I can't seem to access the functions even through there was no error
messages when I load them using library(). I get an error telling me the
function doesn't exist. But when I ran e.g. library(help = psych), the
function I
2009 May 25
3
long format - find age when another variable is first 'high'
Dear R,
I've got a data frame with children examined multiple times and at various
ages. I'm trying to find the first age at which another variable
(LDL-Cholesterol) is >= 130 mg/dL; for some children, this may never happen.
I can do this with transformBy and ddply, but with 10,000 different
children, these functions take some time on my PCs - is there a faster way
to do this in R?
2006 Oct 06
1
glm and plot.effects
Dear R-helpers,
I don't see a difference between the following two plots of effect
objects, which I understand should be different. What am I missing?
require(doBy)
require(effects)
data(budworm)
m1 <- glm(ndead/20 ~ sex + log(dose), data=budworm, weight=ntotal,
family=binomial)
m1.eff <- all.effects(m1)
plot(m1.eff, rescale.axis = FALSE, selection = 2, main = 'rescale =
2010 Jul 08
2
transformation of data.frame
Hello all R users,
I have a problems transforming (or maybe better regrouping) a data.frame.
I have a big data.frame, which I would like to sum up according to a
specific column.
This is an example of my matrix:
ID gen
0042787 gen2
0016070 gen2
0016070 gen3
0007409 Gen1
0007409 gen3
0006511 gen2
0006417 gen3
0016070 gen4
0006511 gen4
I want to rearrange the matrix