similar to: on error execute:

for the moment, I'm using: .onAttach <- function(libname, pkgname) { .bbg.db.conn <<- dbConnect(dbDriver("PostgreSQL"), user="blah","blah") } .onUnload <- function(libpath) { dbDisconnect(.bbg.db.conn) } which results in a hidden global variable in the global environment. I would prefer to make the assignment only in the package namespace.

I've been putting together a package that defined generic methods for database access. The packages is called "Rdbi." It borrows as much as possible from existing database packages / proposals. I'd like to start a discussion about the proposed interface. Here's what I've come up with so far: # # Rdbi: connectionMethods.R # dbConnect <- function(dbObj, ...)

one more bit of information about this problem. If I start R as the user "postgres" i dont have the segmentation fault. ---------- Forwarded message ---------- Date: Wed, 5 Feb 2003 19:19:39 -0500 (EST) From: Rafael A. Irizarry <ririzarr at jhsph.edu> Reply-To: rafa at jhu.edu To: "R-Help (E-mail)" <r-help at r-project.org> Subject: rdbi segmentation fault hi! i

Hi I just started with RMySQL. I have a database with roughly 12 millions rows/records and 8 columns/fields. From all 12 millions of records I want to import 3 fields only. The fields are specified as:id int(11), group char(15), measurement float(4,2). Why does this take > 1G RAM? I run R on suse linux, with 1G RAM and with the code below it even fills the whole 1G of swap. I just

I''m trying to figure out why I''m getting a stack level too deep error. I have controller which parses xml (about 1400 lines) and ingests it into mysql. First I was getting a system stack error every time, but then I found the ulimit -s command which allows me to raise it from 8mb to 64mb. That solved the problem I thought, But now, I can parse the xml once, but when I do it

What am I doing wrong, or is the \r that I'm getting in the example below a bug? > a <- (1:10) > b <- (LETTERS[1:10]) > df <- as.data.frame(cbind(a, b)) > > df a b 1 1 A 2 2 B 3 3 C 4 4 D 5 5 E 6 6 F 7 7 G 8 8 H 9 9 I 10 10 J > library(RSQLite) > drv <- dbDriver("SQLite") > con <- dbConnect(drv, dbname = "Test")

What am I doing wrong, or is the \r that I'm getting in the example below a bug? > a <- (1:10) > b <- (LETTERS[1:10]) > df <- as.data.frame(cbind(a, b)) > > df a b 1 1 A 2 2 B 3 3 C 4 4 D 5 5 E 6 6 F 7 7 G 8 8 H 9 9 I 10 10 J > library(RSQLite) > drv <- dbDriver("SQLite") > con <- dbConnect(drv, dbname = "Test")

I can use the Rdbi package to connect to a PostGreSQL server fine but when I use the dbDisconnect(), I get a segmentation error and it throws me out of R. I'm using RH7.2, R1.4.1, Rdbi 0.1-2, and Rdbi.PgSQL 0.1-2. Anyone else seen anything like this and have an possible answer? Andrew Schuh -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.- r-help mailing

Sorry mistake from me. This was another problem in my mind , but with RMySQL. Christian > library(RMySQL) > library(sqldf) > sqldf("Select * from mtcars") Fehler in mysqlNewConnection(drv, ...) : RS-DBI driver: (Failed to connect to database: Error: Access denied for user 'user'@'localhost' (using password: NO) ) Fehler in if (dbname ==

hey all 'scp -r ' follows symlinks. IMO this is a bug and should be changed - it: a) hampers the use of scp. As it stands, I cannot use 'scp -r' because of this behavior. If someone links to '/', or if I hit a recursive symlink, I'm screwed. b) It is inconsistant with cp. When you 'cp -r' on a file, it does NOT follow the symlink. When you scp

HI. I make this code: getdata<-function('a','b','c' ,'d','e','f'){ drv <- dbDriver("SQLite") con<-dbConnect(drv, "sqlite.db") lt<-dbListTables(con) myf<-data.frame(NULL) for (i in 1:length(lt)) { myfile<-dbReadTable(con,lt[i]) myfile1<-myfile[-c(14:44)] myfile1$MODEL<-gsub(" ",

R-help list, I ported some R code from MS Windows PC to sun-solaris. Both do queries on the same MySQL database. PC version of R is 1.6.1 and solaris version is 1.6.0. I use RMySQL_0.5-0 (on solaris) and RODBC 1.0-1 on PC to connect to MySQL. The PC version took about 65 mins. to run wheras the Solaris (SunOS 5.7) version took 375 mins. (> 6 hrs). R and RMySQL are resident on the same host

---------- Forwarded message ---------- From: Moumita Das <das.moumita.online@gmail.com> Date: Sat, May 16, 2009 at 2:26 PM Subject: Cannot allocate a new database connection error To: r-help-request@r-project.org Hi friends, why do i keep getting this error?The program runs, twice and every third time i get this error.I have to quit.Again get teh R-prompt and then run the script. *Error

I would like to suggest that you announce new releases on the comp.protocols.smb news group. I realize that you have an announcement mailing list, but with my mail box clogged with spam, I am trying to avoid subscribing to mailing lists. I also hear that there is a mailing.unix.samba-technical news group, but that is not carried by all the news servers. The comp.protocols.smb news group seems

Dear R User's Please help me to debug this issue. I am trying to write some data ( i= 6) to PostgreSQL database, but it not writing. Is there any issue in the way I use "dbWriteTable"? ++++++++++++++++++ Source Code ++++++++++++++++++++++++ library("DBI") library("RPostgreSQL") drv1 <- dbDriver("PostgreSQL") i=6 connAE1 <- dbConnect(drv1,host

Hi I've got the error "cannot allocate a new connection -- maximum of 16 connections already opened" after I tried to create a new connection to a database. However, the reason ist, that i did not disconnect previous connections.... I don't know the name of this connections. How can I disconnect this "unknown" connections and drivers? if I delete all objects, the

Hi all! I do hope question from newcomers are wellcome here! Thanks in advance. Trying to catch up and to acquired the needed background to easily read R documents it is being a bit hard to me to get into the required concepts to deal with data. I am trying to get data from a MySQL database and plotting it with barplot. Here the code... library(RMySQL) con <- dbConnect(dbDriver

On Mon, Jan 12, 2009 at 6:31 PM, Martin Morgan <mtmorgan at fhcrc.org> wrote: > An off-list guess is, ironically, to NOT call dbDisconnect or gc(). > > The C code in the package registers a 'finalizer' that gets called when the > object is garbage collected. This is the same code that gets called by > dbDisconnect. Unfortunately, the code does not check to see if

> doveadm expunge -u <user> mailbox '*' savedbefore 30d That doesn't work for me either. The command is accepted, but the messages are not expunged. I guess my search/fetch will just have to return the mailbox name, in addition to other fields, and then I'll need to loop through the mailbox names and perform multiple expunges for each user. I understand the desire to

Hi, I was able to connect to a MySQL database (called "zooscan" and with a table "serie" under Win XP with R 1.6.2 using: > library(DBI) > library(RMySQL) Warning message: DLL attempted to change FPU control word from 8001f to 9001f > drv <- dbDriver("MySQL") > con <- dbConnect(drv, dbname="zooscan") > dbExistsTable(con,