similar to: Changing downloaded source code into a package

Hi, I've got a problem that sounds a lot like this, http://r.789695.n4.nabble.com/Re-R-R-2-12-0-hangs-while-loading-RGtk2-on-FreeBSD-td3005929.html under windoze 7. but it seems to hang with this stack trace, #0? 0x77830190 in ntdll!LdrFindResource_U () ?? from /cygdrive/c/Windows/system32/ntdll.dll building goes as follows, $ ./R CMD INSTALL --no-test-load nlme_3.1-97.tar.gz *

I want to edit a function in the nlme package. I download the package source nlme_3.1-96.tar.gz from the link below then edit it one of the scripts inside of it. From this stage how can I turn it into a package that I can use in R? http://cran.r-project.org/web/packages/nlme/index.html -- View this message in context:

Full_Name: Benjamin Tyner Version: 2.6.0 RC 2007-10-01 r43043 OS: WinXP Submission from: (NULL) (171.161.224.10) platform i386-pc-mingw32 arch i386 os mingw32 system i386, mingw32 status RC major

R Version 2.1.1 (2005-06-20); R Cocoa GUI 1.12 (1622); Mac OS X 10.4.2 (8C46) For nlme, the R package installer for CRAN (binaries) gives 3.1-60 as Repository Version as well as Installed Version. For CRAN (sources) it gives 3.1-62 as Repository Version and 3.1-60 as Installed Version. When I try to update nlme, I get * Installing *source* package 'nlme' ... ** libs gcc-3.3

Dear All, I have just updated R to the version 2.6.2 on F8 (with the official F8 rpm). However, when running as root the following command: update.packages(checkBuilt=T) I get a bunch of errors like the ones below. Any ideas? Thanks in advance, Paul ----------------------------------------------- * Installing *source* package 'nlme' ... ** libs gcc -m32 -std=gnu99 -I/usr/include/R

>From http://bugs.r-project.org/cgi-bin/R: If you are not sure whether you have observed a bug or not, it is a good idea to ask on the mailing list R-Help by sending an e-mail to r-help at stat.math.ethz.ch rather than submitting a bug report. I'm wondering whether to submit a bug report on this: ============================================================== >

I've finally narrowed down a puzzling problem: here is the short test case. tmt34% R --vanilla R version 2.10.0 (2009-10-26) Copyright (C) 2009 The R Foundation for Statistical Computing ISBN 3-900051-07-0 > temp <- matrix(runif(50), ncol=2) > t(temp) %*% temp [,1] [,2] [1,] 7.916016 6.049698 [2,] 6.049698 7.650694 > library(kinship) Loading required package:

Let me modify my question about user-defined covariance structures for LME models: Can somebody tell me how I can see the code for the definition of the correlation structures that come with the NLME package. Specifically I like to see the code for the functions coef, corMatrix, and intialize for any of the pre-defined correlation structures, and use this as a template to define a new correlation

After installing nlme_3.1-7.tar.gz under the latest R (1.2.0, via anonymous CVS), I'm unable to get it to work, i.e.: rossini 94 > /usr/local/bin/R R : Copyright 2000, The R Development Core Team Version 1.2.0 Under development (unstable) (2000-12-06) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type

Dear Dr. Bates, and R-help, I've tried the anova function to test the difference between two coefficients, as shown on page 225 of your book "Mixed Effects Models in S and S-Plus (Statistics and Computing)". When I type: anova( fm2BW.lme, L = c(TimeDiet2 = 1, TimeDiet3 = -1) ) I got the following error message: Error: unexpected '=' in "anova( fm2BW.lme, L =

Full_Name: Jarno Tuimala Version: 2.3.1 OS: Solaris / Linux Submission from: (NULL) (193.166.2.98) Today I downloaded the latest source code release R-2.3.1.tar.gz, and it seems not to contain the VR bundle. After running ./configure I get the following error message: checking for recommended packages... ./src/library/Recommended/VR_*.tar.gz: No such file or directory no configure: error: Some

I have spatial data on a sphere (the Earth) for which I would like to run an gls model assuming that the errors are autcorrelated, i.e. including a corSpatial correlation in the model specification. In this case the distance metric should be calculated on the sphere, therefore metric = "euclidean" in (for example) corSpher would be incorrect. I would be grateful for help on how to

In reference to the thread http://tolstoy.newcastle.edu.au/R/devel/04/10/0859.html I have the same problem updating packages with newly-installed version of released version of R 2.0.1. Previous posts refer to a bug in windows. I wonder if there is a work-around? This probably should go to R-help but it follows on from the post in R-devel. Apologies in advance. OS: Windows XP Professional,

Hi, I'm trying to install from source code the 'nlme' package in RStudio. When I try, I get the following error message: ld: warning: directory not found for option '-L/usr/local/lib/gcc/x86_64-apple-darwin13.0.0/4.8.2' ld: library not found for -lgfortran clang: error: linker command failed with exit code 1 (use -v to see invocation) make: *** [nlme.so] Error 1 ERROR:

Dear all, I am trying to define my own corStruct which is different from the classical one available in nlme. The structure of this correlation is given below. I am wondering to know how to continue with this structure by using specific functions (corMatrix, getCovariate, Initialize,...) in order to get a structure like corAR1, corSymm which will be working for my data. Thanks in advance.

dear list, I am wondering if one can find examples and/or more detailed descriptions of modifications needed when going beyond standard corStruct classes (i.e. those already provided for use in lme/nlme)? When I looked at pages 238-239 of Pinheiro/Bates (2000): Mixed-effects models in S and S-plus, I found that I would need a bit more explicit guidance what to do for implementing a new

Hello, I would like to fit correlation structures with nlme, but R crashes. My data is similar to the "growth of orange trees" example from Pinheiro and Bates (2000), but data are not equally spaced in time, as the last observation is taken after 6 days ( and not 2 as the others). This is the code I'm using: library(nlme)

Dear Rhelp folks, I think I read this in recent Rhelp, but I can't find it in the archive. I need to know how to get lg2c in order to build the nlme package. I'm trying to install nlme_3.1-2.tar.gz on a Linux machine (6.1 Redhat) under R Version 0.99.0 (February 7, 2000). Thanks, Jim Jim Robison-Cox ____________ Department of Math Sciences | |

Hi, I have been using the function lme() of the package nlme to model grouped data that is auto-correlated in time and in space (the data was collected on different days via a moving monitor). I am aware that I can use the correlation classes corCAR1 and corExp (among other options) to model the temporal and spatial components of the auto-correlation. However, as far as I can tell, I can only

Let's say I would like to look inside the function corBrownian in library (ape). When I type in the function name I get the following, which is not nearly the detail that goes into this function. I am wondering how to begin cracking this function open (and others) so I can learn more about it and perhaps code my own corClass one day. Thanks. > corBrownian function (value = 1, phy, form