similar to: Calculating Gwet's AC1 statistic

Does the ext3 patch applies on top of the newly released 2.4.6 kernel (and/or the 2.4.6-ac1 variant) ? I want to upgrade to the new kernel and wanted to know before I run into problems if there are any known problems and if it's better to wait for an 'official' release. Thanks. Stelian. -- Stelian Pop <stelian.pop@fr.alcove.com> |---------------- Free Software Engineer

Since I ain't got a better place to report this, I do it here: Kernel 2.4.20-ac1 # uptime 16:31:00 up 2 days, 22:10, 7 users, load average: 1.89, 2.20, 2.99 This is our main mailbox server. We're running ext3: # cat /proc/mounts rootfs / rootfs rw 0 0 /dev/root / ext3 rw 0 0 /proc /proc proc rw 0 0 /dev/sdb5 /boot ext3 rw 0 0 /dev/sda6 /home ext3 rw,noatime,nosuid 0 0 /dev/sdb8 /tmp

Hi: I am trying to query pubmed abstracts using the following syntax: url= "http://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?" search = paste(url, "db=pubmed&term=", queryTerm1, "+AND+", queryTerm2,"+OR+",queryTerm3, "+OR+", queryTerm4, "[abstract]&retmax=100&usehistory=y", sep="") docId <-

I've been using Dovecot on 2.6.0-test1 for quite awhile but today I jumped ahead to test5 and it broke in the way you described. http://dovecot.procontrol.fi/list/dovecot/2003-July/001943.html I used your workaround and now everyone is back in business. Thank you for the help! (I was sweating there for a bit.) --kyler

Hi, I'm trying to calculate p-value to findout definitely expressed genes compare A to B situation. I got this data(this is a part of data) from whole organism , and each number means each expression values (that means, we could think 'a' gene is 13 in A situation, and it turns 30 in B situation) To findout probability, I'm going to use Audic - Claverie Method. ( The significance

Hi all For various reasons I was looking into 2.6, so I installed a copy on my desktop. Everything works fine, except for dovecot - errors such as this appeared in the syslog: Jul 15 14:41:09 typhaon dovecot: Dovecot starting up Jul 15 14:41:12 typhaon imap-login: setuid(113) failed: Resource temporarily unavailable Jul 15 14:41:12 typhaon dovecot: Login process died too early - shutting down I

I''d like to extend bleucloth or redcloth to support custom tags, e.g. I want to use markup like this: [pubmed:18332676] which shall be extended to: <a href="http://www.ncbi.nlm.nih.gov/pubmed/18332676">Behav Pharmacol. 2008 Mar;19(2):121-128.</a> Does anyone know, if this is possible and has some hints how to do this?! I have not decided, wether I want to use

hi, - big and ugly mail. If you don't like them, delete it now :-) - I have collected and classified some information of: http://home.earthlink.net/~rwhron/kernel/bigbox.html And I observed that ext3 performance is worse than previous kernels(2.4.19...). -ac and -aa are here only as reference. Complete information is in the upper URL. dbench: Performance is worse. dbench (Numbers are in

Hi: I am trying to search PubMed abstracts which contains BOTH two terms: COL4A1 AND Ocular. I am using the following code: url= "http://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?" search = paste(url, "db=pubmed&term=COL4A1+AND+Ocular[abstract]&retmax=300", sep="") docId <- xmlTreeParse(getURL(paste(url, search, sep="")),

Hi, I actually need to download pdfs through R code. The thing which I want to do is that, search for a paper in pubmed, which is possible by using GetPubMed function in the package "NCBI2R?". GetPubMed(searchterm, file = "", download = TRUE , showurl = FALSE, xldiv = ";", hyper = "HYPERLINK", MaxRet = 30000, sme = FALSE, smt = FALSE, quiet = TRUE,

Hi, I'm having an issue with subregisters on my target. With a pseudo that writes to a 32 bit reg: %vreg20<def> = toHi16_low0_pseudo %vreg2; reg32:%vreg20 hi16:%vreg2 expands to %vreg2<def> = COPY %a2h; hi16:%vreg2 %vreg43<def> = mov 0, pred:0, pred:%noreg, %ac0<imp-use>, %ac1<imp-use>; lo16:%vreg43 %vreg20<def> =

Hi dear Rers, I am using SSOAP package to access SOAP service at NCBI. I followed the example code in SSOAP but failed. > z <- .SOAP("http://www.ncbi.nlm.nih.gov/entrez/eutils/soap/soap_adapter.cgi", method="run_eInfo", db="pubmed", action = I("einfo")) Error: protect(): protection stack overflow what's wrong? Thanks very much. Regards

Dear R colleagues, a friend and I are trying to develop a modest workflow for the problem of decomposing tests of higher-order terms into interpretable sets of tests of lower order terms with conditioning. For example, if the interaction between A (3 levels) and C (2 levels) is significant, it may be of interest to ask whether or not A is significant at level 1 of C and level 2 of C. The

I have a new x3655 IBM and whenever the /etc/xen/scripts/network-bridge script starts, the ethernet would no longer work. This post isn''t about the cause, but the fix. I did a lot of tcpdumps and Googling, but I''ll spare you that. All they do is prove that yes, there is an issue. :) I tried Debian 4.0 i386/amd64 and Ubuntu 7.04 Server i386/amd64 and they all exhibit the

Dear R folks: I am trying to use SSOAP (version 0.2-2) package in R (version 2.1.0,linux) to access SOAP service on NCBI (http://www.ncbi.nlm.nih.gov) its WSDL file is at http://www.ncbi.nlm.nih.gov/entrez/eutils/soap/eutils.wsdl but some errors occured: > ncbi <- processWSDL("http://www.ncbi.nlm.nih.gov/entrez/eutils/soap/eutils.wsdl") > ff <-

Hi all: I get the following error message that I am not able to resolve. Error in if (const(t, min(1e-08, mean(t)/1e+06))) { : missing value where TRUE/FALSE needed It appears right before the last data.frame statement. Below is the program that simulates data from one way random effects model and then computes normality and bootstrap confidence interval for

I would like to track in which journals articles about a particular disease are being published. Creating a pubmed search is trivial. The search provides data but obviously not as an R dataframe. I can get the search to export the data as an xml feed and the xml package seems to be able to read it. xmlTreeParse("

Hi, I created the model below, which returns me the following warning message: In sem.default(ram = ram, S = S, N = N, param.names = pars, var.names = vars, : Could not compute QR decomposition of Hessian. Optimization probably did not converge. ######### Model ######## mDPDF = data.frame(mj1,mj2,mj3,mj4,mj5,eL1,eL2,eL3,eL4,eL5,aC1,aC2,aC3,aC4,disR1,disR2,disR3,disR4,disR5,

Dear all, I have run a hierarchical log-linear analysis using loglin {stats} and came up with a specific model. loglin returns me the parameter estimates giving me an idea in which direction the observed frequencies deviate from the expected ones for my different factors. To assess the significance of any such effects I would need to calculate the ratio of the log-linear parameter

I want to analyze binary, multinomial, and count outcomes (as well as the occasional continuous one) for clustered data. The more I search the less I know, and so I'm hoping the list can provide me some guidance about which of the many alternatives to choose. The nlme package seemed the obvious place to start. However, it seems to be using specifications from nls, which does non-linear