similar to: Custom nonlinear self starting function w/ 2 covariates

Hi, I have R 2.6.0 with updated lme4 and Matrix packages, and I am trying to fit a nonlinear multilevel model. I get the following error message: Error in nlmer(f ~ grModel(x, w, Tmin, Tmax, Topt, kopt, m) ~ kopt | flat, : gradient attribute of evaluated model must be a numeric matrix and I wonder what this may indicate. The nonlinear model I try to fit is as follows: > grModel

I am trying to explore nlmer by running some nlme examples from Pinheiro & Bates (2000). I do not seem to find information how to specify fixed effects covariates to nlmer models. Specifically, I tried to run the "Carbon Dioxide Uptake" example from p. 368 onwards in the PB200 book. The model without fixed effects covariates runs well but how to tell nlmer to include Type and

HI: I need ideas on how to make this code shorter (maybe with a second loop?). The code as it is works, but in this case I only have 14 samples, but it will become insane with more, so I need a way to make it more automatic. The problem is that the output from ts1, ts2, and so on is a vector with more than one value, so I do not know how to solve this. Thanks Prenewbie The code is the

Very much a rookie at R, and have only recently started using it again so pardon the simple question. I am trying to produce a box plot from one data set and then overlay a line plot from another data set. The box plot data set is made up of 20 sets of 30 data points, or 600 total data points. The line has only 30 total data points. The box plot is plotting fine, but for some reason, the line plot

I have a set of time-series climate data with missing entries. I need to add rows for these missing entries to this data set. The only way I know to do this is unsing a foreloop, but this won't work on a list. I've tried to convert the list to a data frame, but that won't happen, either. I want to fill rows in this table: > newtest[10:15,] yrmos yearmo snow.sum snow.mean

Dear all, I am trying to create a vector name, for example tmax.195012 from tmax., 1950 and 12. Obviously I don't wish to simply type it because the 3 name components are changing in each iteration within a loop. Is there any way of concatenating those 3 components (which are a mixture of numbers and letters)? Thanks for reading, Panos

Hello everyone, I am working for a few days already on a basic algorithm, very common in applied agronomy, that aims to determine the degree-days necessary for a given individual to reach a given growth stade. The algorithm (and context) is explained here: http://www.oardc.ohio-state.edu/gdd/glossary.htm , and so I implemented my function in R as follows: DD <- function(Tmin, Tmax, Tseuil,

Hello, I am an R newbie, trying to use lsoda to solve standard Lotka-Volterra competition equations. My question is: how do I pass a parameter that varies with time, like say, phix <- 0.7 + runif(tmax) in the example below. # defining function lotvol <- function(t,n,p){ x <- n[1]; y <- n[2] rx <- p["rx"]; ry <- p["ry"] Kx <-

Dear all, I have a data similar to this: myframe<- data.frame (ID=c("Ernie", "Ernie","Ernie","Ernie"), Timestamp=c("24.09.2012 08:00", "24.09.2012 09:00", "24.09.2012 10:00", "25.09.2012 10:00"), Longitude=c("8.481","8.482","8.483","8.481"),

I am trying to run the following code in R on a Linux cluster. I would like to use the full processing power (specifying cores/nodes/memory). The code essentially runs predictions based on a GAM regression and saves the results as a CSV file for multiple sets of data (here I only show two). Is it possible to run this code using HPC packages such as Rmpi/snow/doParallel? Thank you!

Dear all Im new in R I have a necdf data set that I want to plot : this is my data set [1] "file Tmax.DJF.daily.1981_1999.echama2.nc has 4 dimensions:" [1] "longitude Size: 127" [1] "latitude Size: 110" [1] "ht Size: 1" [1] "t Size: 1680" [1] "------------------------" [1] "file Tmax.DJF.daily.1981_1999.echama2.nc has 1

Greetings all! A recent news item got me thinking that a problem stated therein could provide a teasing little exercise in R programming. http://www.bbc.co.uk/news/uk-england-cambridgeshire-17680326 Cambridge University hosts first European 'maths Olympiad' for girls The first European girls-only "mathematical Olympiad" competition is being hosted by Cambridge

Estimados erreros, Estoy intentando entender como calcula el paquete dismo ( https://cran.r-project.org/web/packages/dismo/index.html) un coeficiente de variación. Os pongo un ejemplo: tmin <- c(10,12,14,16,18,20,22,21,19,17,15,12) # temperatura mínima media mensual de un año tmax <- tmin + 5 # temperatura máxima media mensual de un año prec <- c(0,2,10,30,80,160,80,20,40,60,20,0)

Thank you for providing the example code... for the request of running it multiple times it would have helped if you could have confirmed that the example ran through without errors... there were a lot of mistakes in it. Look into using the reprex package to check your example next time. I don't do this kind of analysis... I really don't know what to expect from the functions. The

Hello -- Given the 10x2 matrix below, my goal is to create a vector which contains the maximum of column 1 and column 2, or the only value if there is an NA in one column. I experimented with max.col without success. Thanks. --Dale > tmax.m tmaxhme tmaxer [1,] 101.0 99.8 [2,] 102.5 99.0 [3,] 100.6 98.4 [4,] NA 100.5 [5,] 101.0 99.4 [6,] NA

Hola, en la misma definici?n de la funci?n: # P15. Precipitation Seasonality(Coefficient of Variation) # the "1 +" is to avoid strange CVs for areas where mean rainfaill is < 1) p[,15] <- apply(prec+1, 1, cv) Un saludo, Jorge On Martes, 19 de Junio de 2018 13:07:27 Marcelino de la Cruz Rot escribi?: > Hola Jaume: > > Si miras el c?digo de biovars() ver?s que la

[answers inline] On 18 August 2017 at 20:08, Dagmar <Ramgad82 at gmx.net> wrote: > > myframe<- data.frame (ID=c("Ernie", "Ernie","Ernie","Ernie"), > Timestamp=c("24.09.2012 08:00", "24.09.2012 09:00", "24.09.2012 10:00", > "25.09.2012 10:00"),

I have a generalized linear model to solve. I used package "geepack". When I use the correlation structure "unstructured", I get a messeage that- R GUI front-end has stopped working. Why this happens? What is the solution? The r codes are as follows: a<-read.table("d:/bmt.txt",header=T")

I have one data frame with a column of dates and I want to fill another data frame with one column of dates, one of years, one of months, one of a unique combination of year and month, and one of days, but R seems to have some problems with this. My initial data frame looks like this (ignore the NAs in the other fields): > mans[1:10,] date loc snow.new prcp tmin snow.dep tmax 1

Hi, Im posting here the next doubt: Yesterday a korean company has released a new OS which is compatible with MS Windows Apps. As they state, they are a propietary OS, and i cant see any GPL code or SVN repository.Of course my lack of Korean can help to not find the open source code,but the little im able to read seems they arent going to release any source code. I know that is quite difficult