similar to: download gplots and caTools

Hi, I tried to install the caTools package manually from the main R Project website and I get the following error message when typing library('caTools') Error in library("caTools") : 'caTools' is not a valid package -- installed < 2.0.0? What am I doing wrong? Also, why is this package not available in the list of packages for direct installation from the R

I had installed de "gplots" package and then I loaded the library but the package did not work. I recieved a message like this: > install.packages("gplots", dependencies = TRUE) Installing package(s) into ‘/home/fpiston/R/x86_64-pc-linux-gnu-library/2.14’ (as ‘lib’ is unspecified) --- Please select a CRAN mirror for use in this session --- Loading Tcl/Tk interface ... done

Hi I got the following error using as.xts Error in xts(x, order.by = order.by, frequency = frequency, ...) : NROW(x) must match length(order.by) Here is how the data looks like > d1 <- read.csv(file.path(dataDir,"AppendixA-FishCountsTable-2009.csv"), as.is=T) > d1[1:3,] dive_id date time species count size site depth level TRANSECT VIS_M 1 62 10/12/2009

Hi, I was trying to run the following, where the labels on the x axis are dates and need to be converted to characters. It did not work. Any help would be appreciated. Thanks. > text(axTicks(1),par("usr)[3]-2,srt=45,adj=1,labels=as.character(c("2008-01-08","2008-08-10","2008-08-22","2008-09-03", "2008-09-15")), xpd=T, cex=0.8) Error:

Hi, Here is my data, the first 10 rows > u=regCond_all[1:10,] > dput(u) structure(c(999, 999, 999, 999, 999, 999, 999, 999, 999, 999, 99, 99, 99, 99, 99, 99, 99, 99, 99, 99, 99, 99, 99, 99, 99, 99, 99, 99, 99, 99, 1.9, 2, 1.97, 1.99, 1.83, 1.78, 1.6, 1.52, 1.52, 1.36, 10.53, 9.88, 9.88, 10.53, 10.53, 10.53, 5.26, 9.88, 10.53, 10.53, 5.4, 5.57, 5.46, 5.34, 5.5, 5.59, 5.62, 5.76, 6.23, 6.19,

Hello, I would like to convert date as a factor to represent time in a repeated measure situation in the following code. How would I do that? > d <- read.csv(file.path(dataDir,"data.csv"), as.is=T,stringsAsFactors = FALSE) > d[1:2,] id date a b c y 1 1 8/6/2008 Red 15 B 22 2 1 8/6/2008 Green 15 B

Hi, I could not locate library ts in the CRAN website. Please help. Yolande [[alternative HTML version deleted]]

Hello, This should be pretty simple but I cannot get it right. Please point to the right code. Thanks. > last <- read.csv(file.path(dataDir,"plot1.csv"), as.is=T,stringsAsFactors = FALSE) > last date r_wvht 1 8/6/2008 0.9766667 2 8/8/2008 0.7733333 3 8/11/2008 1.4833333 4 8/13/2008 1.5766667 5 8/14/2008 1.3900000 6 8/18/2008 0.7800000 7 8/20/2008

I was wondering why I get <NA> instead of the timestamp in the following. Thanks. > dataDir <- file.path(wd) > localRaw <- read.csv(file.path(dataDir,"LOCAL.csv"), as.is=T,stringsAsFactors = FALSE) > localRaw[1:2,] Year Month Day hour minute second Temp1mab Temp7mab Temp14mab Salinity1mab 1 2009 10 5 0 0 0 11.288 13.675 13.743 33.513

Dear Mr. Tuszynski, I would like to request what I believe would be a beneficial update / patch to the runmean() function in the caTools package. Consider the following R>> x = 1:100 R>> is.integer(x) [1] TRUE R>> library(caTools) R>> head(runmean(x, 5, alg="exact")) [1] 8.487983e-314 1.060998e-313 1.273197e-313 1.697597e-313 2.121996e-313 2.546395e-313

Hello, I have the following design, counts were collected at different transects, different depths and different sites at different times. Time is continuous and assumed to be random, all the others are categorical fixed where transect is nested within depth which is nested within site. I would like an expert opinion about the following code where intercept is modeled as random (I am not sure

Everyone, I've got code in my package that uses LogitBoost from the caTools package. caTools does not have a namespace. My package also uses loads RWeka, which has a namespace, and also has a function called LogitBoost. After loading both packages, how can I be specific about running the version from caTools (since caTools:::LogitBoost won't work)? Thanks, Max

Hello, I have the following loop for two data sets: diveData_2008 and diveData_2009. It uses two other data: diveCond_all and fishTable. The problem is at the point to identify the dive_id for the given index (index is timestamp). It keeps on saying for the1st loop Error in fishReport$dive_id[i] <- dive_id : replacement has length zero for the 2nd loop Error in fishReport$dive_id[i + j] <-

Hi, I suddenly started getting strange errors while working on my caTools package: >RCMD install C:/programs/R/rw2011/src/library/caTools ...... preparing package caTools for lazy loading Error in file(file, "r", encoding = encoding) : all connections are in use Execution halted make: *** [lazyload] Error 1 *** Installation of caTools failed *** I searched

Hello, I looked in the R-help but could not find an archive addressing the following. I would like to convert a character to numeric after reading a file with RDS extension. After using as.numeric, I checked if it is numeric. It was not converted. Please help. Here is my code >Report <- readRDS(file="RDS/Report.RDS") > Report[1:2,] dive_id date

Hi, A minor announcement. I just added two functions for reading and writing GIF files to my caTools package. Input and output is in the form of standard R matrices or arrays, and standard R color-maps (palettes). The functions can read and write both regular GIF images, as well as, multi-frame animated GIFs. Most of the work is done in C level code (included), so functions do not use any

Hi, I'm encountering trouble compiling caTools_1.17.1.tar.gz and e1071_1.6-4.tar.gz on a Linux system using the Intel compiler suite. 14 other packages I generally use installed without any trouble. I notice both of these trouble packages have a C++ component, so I wonder if that might be the issue. Below, there's information on my platform, compiler, and some diagnostic output showing

I am trying to read an xlsx spreadsheet (1506 rows, 501columns) all populated but getting the following error: Please advise as to how to get around this issue. > res <- read.xlsx("c:\\BSE_v2.xlsx",1) Error in .jcall("RJavaTools", "Ljava/lang/Object;", "invokeMethod", cl, : java.lang.OutOfMemoryError: Java heap space Here is the session info:

Hi Martyn, Thanks for your insight, that seems pretty direct. Unfortunately, I did not compile this version of R (it's on a large supercomputer system and this version of R was installed by the admins). Using "R CMD config", I see the following relevant settings: DYLIB_LD = icc -std=gnu99 DYLIB_LDFLAGS = -shared -openmp LDFLAGS = -L/opt/compilers/intel/cce/9.1.039/lib

I am pretty pleased with baselines I fit to chromatograms using the runquantile() function in caTools(v1.6) when its probs parameter is set to 0.2 and its k parameter to ~1/20th of n (e.g., k ~ 225 for n ~ 4500, where n is time series length). This ignores occasional low- side outliers, and, after baseline subtraction, I can re-adjust any negative values to zero. But runquantile's