similar to: executable script

On 20 October 2010 at 09:57, Aman Thakral wrote: | Thanks for your reply. I just created a link to | /usr/local/lib/R/lib/libRlapack.so in /usr/local/lib. It works now. | I'm just curious, is this the "right" way to do it? Is there a better way? I am coming to this a little late but ... it is a band aid to a self-inflicted wound. You only have libRlapack because you built R

Hi all, I am new to python, R and rpy2. I having few errors when I am using 'fisher.test' function where I am struck now. Please help to fix these bugs. My code for fisher.test goes this way *from rpy2 import * import rpy2.robjects as robjects def fisherExact(a,b,c,d): v = [a,b,c,d] m = robjects.r['matrix'](v,2,2) s = robjects.r['fisher.test'](m) return s *

Hi This is my function. It serves an HTML page after the calculations. I'm connecting to a MSSQL DB using pyodbc. def CAPM(self,client): r=self.r cds="1590" bm="20559" d1 = [] v1 = [] v2 = [] print"Parsing GET Params" params=client.g[1].split("&") for items in

Dear list, there seems to be a problem with the standard location of R?s 64-bit libs at least under openSUSE. I had two user questions regarding the compilation of rpy2 for 64-bit systems. Personally I don`t know rpy2 but maybe someone on this list can decide if the mistake lies on R`s side or on rpy2?s side or in between. R-devel is installed in these cases, I asked. Latest R-base or

Dear list, When calling R from C, what appears like a spurious error can be triggered during the execution of chisq.test(x, y). This is happening when the following conditions are met: - x and y are "anonymous" C-level R vectors (they do not have a symbol), but they are protected from garbage collection - x and y are "not too small" (it was experienced as soon as they are

Hi While installing RPy2, I had curious problems which, if I traced them back correctly, have their root in the way that libR.so find the R installation directory. I wonder if this might be a subtle bug that only causes problems when one has several versions of R on one system but then can be very annoying and cause very strange behaviour. It seems to me that libR.so asks the Unix shell to

I am trying to create a pie chart using rpy2 of the following data Pathway Occurrences A 10% B 50% C 20% E 10% filename = './testing.png' grdevices = importr('grDevices') rdevices.png(file=filename, width=1200, height=800) dataf = Robjects.DataFrame({'pathways':Robjects.StrVector(Pathways),

Beside the possible argumentation that with an API elegance and convenience might sometimes be superior to necessity, the suggested pattern ("every program, including R itself, keeping its own flag") does no work too well when the nested embedding of R is involved. A concrete example is: ``` $ R -q > library('rPython'); python.exec('import rpy2.robjects') R is already

Laurent, On May 3, 2015, at 8:07 PM, Laurent Gautier <lgautier at gmail.com> wrote: > rPython appears to provide an interface from R to Python by embedding > Python and I'd think that it can safely assume that R has been initialized, > but might not be the point here. > > The issue is that a Python package embedding itself R (here rpy2) appears > to have no way to

rPython appears to provide an interface from R to Python by embedding Python and I'd think that it can safely assume that R has been initialized, but might not be the point here. The issue is that a Python package embedding itself R (here rpy2) appears to have no way to know that earlier in the life of the process R was initialized. 2015-05-03 19:48 GMT-04:00 Duncan Murdoch

I am having a strange problem. I have been using python + rpy2 on my Mac for quite sometime now. I recently upgraded to OS X 10.8 from 10.6 and that's when the problem began. Now, when I try to load some R packages (like zoo) using robjects.r, python crashes with seg fault 11. Here's an example below: >> import rpy2.robjects as ro >> ro.r(''' library(zoo)

I am having a strange problem. I have been using python + rpy2 on my Mac for quite sometime now. I recently upgraded to OS X 10.8 from 10.6 and that's when the problem began. Now, when I try to load some R packages (like zoo) using robjects.r, python crashes with seg fault 11. Here's an example below: >> import rpy2.robjects as ro >> ro.r(''' library(zoo)

On 03/05/2015 7:02 PM, Laurent Gautier wrote: > Beside the possible argumentation that with an API elegance and > convenience might sometimes be superior to necessity, the suggested > pattern ("every program, including R itself, keeping its own flag") does > no work too well when the nested embedding of R is involved. > > A concrete example is: > ``` > $ R -q

Hello all, I recently installed rpy2 so that I could use R through Python. However, R was not recognized in the command line. So I decided to add it to the PATH variables. But it just doesnt work.... And what I mean by it doesnt work is : No matter what I type at the prompt in DOS- be it R, Rcmd, R CMD, Rscript- it is not recognized as a command. Path variables used : 1. %R_HOME% -->

Hi again. I'm putting together a little project with R, python, and a website. So I have an HTML file, a py file, an R file. Here is the HTML file: <form action="/cgi-bin/radio4.py" method="post" target="_blank"> <input type="radio" name="subject" value="Integrate" /> Integrate <input type="radio"

On 21/12/14 02:25, Tim Dunphy wrote: > Hey all, > > I'm attempting to upgrade a Centos 5.9 machine to CentOS 5.10. > > But when I try the yum update command I get this response: > > --> Finished Dependency Resolution > python26-PyYAML-3.08-5.el5.x86_64 from installed has depsolving problems > --> Missing Dependency: libyaml-0.so.1()(64bit) is needed by

Hi, Is anyone here running memcached + python2.6 + django setup on a CentOS 5.5?? Am trying to set one up here and have trouble with the python26-memcached installation. So far i have installed (via yum): 1.python26 2. python26-memcached 3. libevent 4. memcached-devel Now when i try to run `import memcache` from the python2.6 shell i get an ImportError: No module

Removing that libyaml package allowed me to upgrade! Thanks for the tip! Tim On Sat, Dec 20, 2014 at 9:25 PM, Tim Dunphy <bluethundr at gmail.com> wrote: > Hey all, > > I'm attempting to upgrade a Centos 5.9 machine to CentOS 5.10. > > But when I try the yum update command I get this response: > > --> Finished Dependency Resolution >

Hey all, I'm attempting to upgrade a Centos 5.9 machine to CentOS 5.10. But when I try the yum update command I get this response: --> Finished Dependency Resolution python26-PyYAML-3.08-5.el5.x86_64 from installed has depsolving problems --> Missing Dependency: libyaml-0.so.1()(64bit) is needed by package python26-PyYAML-3.08-5.el5.x86_64 (installed) --> Running transaction

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