similar to: How to generate Mackey-Glass time series with "ddesolve" package?

Greetings, When I try "install.packages('Rcpp')" it fails when compiling api.cpp (line 39). This is Rcpp 0.11.3. I searched my filesystem, and indeed I do not have execinfo.h anywhere. After some effort, I got R build on AIX. Now I am trying to build the packages I need. Rcpp is crucial. I first build R with the native IBM XL compilers, and Rcpp wouldn't build. That was

I have not devoted time to setting up ROracle since binaries are not available and it seems to require some effort to compile (see http://cran.r-project.org/web/packages/ROracle/index.html). On the other hand, RODBC worked more or less magically once I set up the data sources. What is your success using ROracle and why would it be preferable to RODBC ? -Avram On Thursday, September 11,

Greetings! Can someone provide a simple script for a R function that recursively builds a binary tree. I am most familiar with C and pass by reference, but I think R is like Fortran and pass by value. - Mike Beddo

I've posted a message twice to this list, and never seen it appear yet ... perhaps this one will go through ... ? -- Aaron J. Mackey, Ph.D. Dept. of Biology, Goddard 212 University of Pennsylvania email: amackey at pcbi.upenn.edu 415 S. University Avenue office: 215-898-1205 Philadelphia, PA 19104-6017 fax: 215-746-6697

[ Not sure why, but the first time I sent this it never seemed to go through; apologies if you're seeing this twice ... ] I have some fully functional code that I'm guessing can be done better/quicker with some savvy R vector tricks; any help to make this run a bit faster would be greatly appreciated; I'm particularly stuck on how to calculate using "row-wise" vectors

Dear All, Sorry if this question has been posted before but there's no enough answer to solved my problem and I'm going crazy because of it....:( I'm currently installed Samba-2.2.8a as logon server on My FreeBSD 5.0. For Win 9.X client there's no problem at all. But when I tried to joining W2K client into samba domain it's shown an error message such as : "the

Hi. I have asked this question before and Aaron J. Mackey and Tony Plate gave me some great insight but I still can't figure out how to do what I am trying to accomplish. So let me ask again... What I am trying to do is to make R read data from pipe (stdin). Say I have following files on my directory my.dat apple 1 orange 2 grape 3 my.R d <- read.table(

Hi in order to keep the dial tone after pressing 9 for 'outside line' I have this in my extensions.conf [localpstn] ignorepat => 9 exten => _9[123456789]XXXXXXX,1,Dial,${PSTN}/${EXTEN:1} exten => _9[123456789]XXXXXXX,2,Congestion this is properly included in the handsets' context but the dial tone disappears after pressing 9. am I missing something? thanks in advance

hello i have a mixed effect model which gives slope and intercept terms for 6 groups (diagnosis (3 levels) by risk group(2 levels)). the fixed part of the model is -- brain volume ~ Diagnosis + Risk Group + (Risk Group * age : Diagnosis) - 1 thus allowing risk group age/slope terms to vary within diagnosis and omitting a nonsignificant diagnosis by risk group intercept (age was centered)

If I actually finished writing this module, would any of you use it? Would you wish it did something else/different than what's described below? Any comments or suggestions on its proposed usage, intent, or syntax are welcome! (An alternative, better name would also be appreciated) -Aaron NAME R::Wrapper - Wrapper around the RS-Perl R module SYNOPSIS #!/usr/bin/perl -w

I'm a newcomer to R. I can't seem to find any documentation how to add error bars to points in scatter plots. I guess I could plot the points, then compute and plot line segments in the X and/or Y directions to represent the errors? - Mike -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.- r-help mailing list -- Read

There are numerous tools like scons, make, ruffus, ant, rake, etc. that can be used to build complex pipelines based on task dependencies. These tools are written in a variety of languages, but I have not seen such a thing for R. Is anyone aware of a package available? The goal is to be able to develop robust bioinformatic pipelines driven by scripts written in R. Thanks, Sean

Hi, In support of reproducible research at my Institute, I seek an approach to re-creating the R environments in which an analysis has been conducted. By which I mean, the exact version of R and the exact version of all packages used in a particular R session. I am seeking comments/criticism of this as a goal, and of the following outline of an approach: === When all the steps to an workflow

Hello List, Can you recommend me if odeSolve can handle stiff delay differential equations with discontinuities? Or any other package? Best, -m

There's got to be a better way to use order() on a matrix than this: > y 2L-035-3 2L-081-23 2L-143-18 2L-189-1 2R-008-5 2R-068-15 3L-113-4 3L-173-2 398 1 1 2 2 1 1 2 2 857 1 1 2 2 1 2 2 2 911 1 1 2 2 1 2 2 2 383 1 1

I have a 47k x 47k adjacency matrix that is very sparse (at most 30 entries per row); my textual representation therefore is simply an adjacency list of connections between nodes for each row, e.g. node connections A B C D E B A C D C A E D A E A F F E G H I'd like to import this into a dataframe of node/connection (character/vector-of-characters) pairs. I've experimented with

I have a big SQL Server application that needs some help from R, and this R needs to load a large workspace in order to service the database request. I'd like to keep an R process running continually because loading the workspace takes about 1 minute. The data in the workspace doesn't change very often. Rserve doesn't seem to align with my needs - I don't want a new workspace with

I'm building R-3.1.1 (64 bit) from source on AIX 7.1. It was going well until I hit this: xlc_r -q64 -Wl,-brtl -Wl,-G -Wl,-bexpall -Wl,-bnoentry -lc -L/opt/freeware/lib64 -L/opt/freeware/lib -Wl,-blibpath:/opt/freeware/lib64:/opt/freeware/lib:/usr/lib:/lib -Wl,-bmaxdata:0x80000000 -o tools.so text.o init.o Rmd5.o md5.o signals.o install.o getfmts.o http.o gramLatex.o gramRd.o -lm make[6]:

Hello, I am solving a set of ODEs using deSolve and have run into a problem I would appreciate some advice on. One of the parameters (m) in the ODEs changes between two states when one of the variables (D) crosses a threshold (D_T) for the first time in either direction. Additionally, when the variable crosses the threshold (either by increasing or decreasing), there is a time delay (delay)

My apologies if this is a FAQ, I searched the mailing list archives before posting. Background: I am a long time user of SPlus, and a recent user of R. My work normally involves converting the raw output of something interesting into data to be analyzed in S/R, for which I use Perl extensively. I then import the data into S/R, perform the analyses I need, dumping the values into a new file,