similar to: Error message GSA package

Hi BioC user, I have a problem extracting the gene set I would like to work with. Here is I work with my data: normData <- read.delim("normalizedData.txt",sep ="\t") ######### two class unpaired comparison # y must take values 1,2 classes <- c(-1,-2,1,2) #prepere the data for the samr analysis data.x <-as.matrix(normData[,8:11]) d=list(x=data.x,y=classes,

Here's the state of my search: BatteriesPlus is... odd. The corporate site, and after a phone call, tell me they don't do GSA, but some of their franchises do. I called the local one, and they do. However, the only RBC 43 they offer, I might as well buy direct from APC, at well over $300 for the set. Battery Sharks, and Apex, don't do GSA... but they *do* offer replacements for about

Greetings, I'm trying to debug a simple two-line plot routine in R called test.R: cor(swiss) plot(swiss$Catholic, swiss$Examination) These commands work fine when typed into R. They also work fine when I invoke this routine by the following line into my terminal: R --slave < /Library/WebServer/Documents/gsa/test.R My ultimate goal is to send data to this R routine via a web

Dear R-helpers, I'm not a speciallist in writing complex functions, and the function still very rusty (any kind of suggestions are very welcome). I want to implement Gale-Shapley algorithm for R Language. It is based on http://www.jstor.org/stable/10.2307/2312726 Gale and Shapley (1962) , and it has evolved to

-----BEGIN PGP SIGNED MESSAGE----- Hash: SHA1 I'm trying to understand some C code in an R package I'm using. I'm address this question here as it's matrix algebra...and I'm no pro at that! the C command reads: double alpha = 1.0, beta = 0.0; dsyrk_("L", "N", nGenes, nGenes, & alpha, mat1, nGenes, & beta, mat2, nGenes); - From google,

This is in relation to bringing up a new oVirt environment. When I was bringing up oVirt (Hosted-Engine), I had the Glusterd service stopped, since the server (I have its name as GSAoV07) was initially only going to be used to host the oVirt engine as a hypervisor (it will have Gluster volumes in the near future). I have three other servers I am using for storage. One of those three is also going

hi I want to compare two list by its names and get the values of that list. can anybody let me know the syntax of comparing the list by their names using a for loop c.genes<- list() for(i in 1:100) c.genes[[1]]<- geneset(which(geneset == tobecampared[i])) } here geneset is a list and also tobecampared is a list Thank you Ramya -- View this message in context:

I've purchased an LG DVD Burner (GSA-E60L) External super Multi DVD Rewiter for my PE2950 Dell Server attached via USB. Can someone guide me to set up the DVD with Linux, and which tools should I use to burn DVD? [root at PowerEdge1 /]# cdrecord -scanbus Cdrecord-Clone 2.01 (cpu-pc-linux-gnu) Copyright (C) 1995-2004 J?rg Schilling Note: This version is an unofficial (modified) version with

Hi, Could you please let me know to use a list in a for loop here geneset is a loop.I am trying to match the names of the list with 1st row of the output. result<- list() for(i in 1:length(output) { result[[i]] <- geneset(which(geneset %n% output[,1])) } Kindly help me out -- View this message in context: http://www.nabble.com/For-loop-tp18163665p18163665.html Sent from the R

glusterd failed to resolve addresses of the bricks. This could happen either because of glusterd was trying to resolve the address of the brick before the N/W interface was up or a change in the IP? If it's the latter then a point to note is that it's recommended that cluster should be formed using hostname otherwise if the server goes through IP change we have to change the configuration

hi there, I want to write the plots in the pdfs and the details about the graph in a seperate notepad. plot(as.numeric(lapply(resultgenes,length)), main= "Geneset.gene#.bias.test",xlab="Top.Ranked.Genesets", ylab="gene.number.per.geneset") lines(loess.smooth(c(1:1000),as.numeric(lapply(resultgenes,length)), span = 2/3, degree = 1, family =

hi I have vector test. It has 3 elements. I want to join the three into one vector. "Geneset=HSA04910_INSULIN_SIGNALING_PATHWAY-157- 20". how can i do it. > class(test) [1] "character" > test [1] "Geneset=HSA04910_INSULIN_SIGNALING_PATHWAY" "157" [3] "20" Ramya --

Thank you for your response. There has been no change of IP addresses. And I have tried restarting the glusterd service multiple times. I am using fully qualified names with a DNS server that has forward and reverse setup. Something I had noticed is that, with oVirt, communication is being attempted over the VM network, rather than storage network. Which is not how the bricks are defined. Not sure

On Mon, Jun 12, 2017 at 6:41 PM, Atin Mukherjee <amukherj at redhat.com> wrote: > > On Mon, 12 Jun 2017 at 17:40, Langley, Robert <Robert.Langley at ventura.org> > wrote: > >> Thank you for your response. There has been no change of IP addresses. >> And I have tried restarting the glusterd service multiple times. >> I am using fully qualified names with a

Hello, I?m currently using another open source search engine/indexer and am having performance issues, which brought me to learn about Xapian. We have approximately 350 million docs/10TB data that doubles every 3 years. The data mostly consists of Oracle DB records, webpage-ish files (HTML/XML, etc.) and office-type docs (doc, pdf, etc.). There are anywhere from 2 to 4 dozen users on the

.... I just installed CentOS 4.4 yesterday P.M., on my 2.4 GHz P4 box, Foxconn i865 mbd, 2 GB DDR400 RAM (4 X 512 MB), 1 X 20 GB HDD (hda), 1 X 160 GB HDD (hdb), 1 X LG GSA H22N DVD reader/burner (hdc), 1 X 400 GB HDD (hdd), Coolmax CP500-T PSU. I wiped SuSE 9.2 off of the 20 GB drive & installed CentOS. The other 2 drives were already ext3 FS & will be mounted as /home & /work

On Mon, 12 Jun 2017 at 17:40, Langley, Robert <Robert.Langley at ventura.org> wrote: > Thank you for your response. There has been no change of IP addresses. And > I have tried restarting the glusterd service multiple times. > I am using fully qualified names with a DNS server that has forward and > reverse setup. > Something I had noticed is that, with oVirt, communication

The GeneSetCollection class in the Bioconductor package GSEABase extends 'list' > library(GSEABase) > showClass("GeneSetCollection") Slots: Name: .Data Class: list Extends: Class "list", from data part Class "vector", by class "list", distance 2 Class "AssayData", by class "list", distance 2 If I create

On Mon, Jun 12, 2017 at 7:30 PM, Langley, Robert <Robert.Langley at ventura.org > wrote: > As far as the peer status (and I now remember seeing this earlier) the > issue appears to be that the host name for gsaov07 is attempting to resolve > over the wrong network for gluster "ent...." and not "stor.local". > So, it may be as simple as removing gsaov07 as a

As far as the peer status (and I now remember seeing this earlier) the issue appears to be that the host name for gsaov07 is attempting to resolve over the wrong network for gluster "ent...." and not "stor.local". So, it may be as simple as removing gsaov07 as a peer, then probing over the correct network. I'll follow up with the Engine log. Sent using OWA for iPhone